Jan van Gemert

Dr. Jan van Gemert

Delft University of Technology
orcid

Research Focus & Metrics

Academic Career Length

11Years (2016-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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2 December 2020 in Applied Sciences
Verified
Journal Article
Open access
PDF file
Amogh GudiAmogh Gudi
Amogh Gudi
Marian BittnerMarian Bittner
Marian Bittner
Jan van GemertJan van Gemert
Jan van Gemert
Remote photo-plethysmography (rPPG) uses a camera to estimate a person’s heart rate (HR). Similar to how heart rate can provide useful information about a person’s vital signs, insights about the underlying physio/psychological conditions can be obtained from heart rate variability (HRV). HRV is a measure of the fine fluctuations in the intervals between heart beats. However, this measure requires temporally locating heart beats with a high degree of precision. We introduce a refined and efficient real-time rPPG pipeline with novel filtering and motion suppression that not only estimates heart rates, but also extracts the pulse waveform to time heart beats and measure heart rate variability. This unsupervised method requires no rPPG specific training and is able to operate in real-time. We also introduce a new multi-modal video dataset, VicarPPG 2, specifically designed to evaluate rPPG algorithms on HR and HRV estimation. We validate and study our method under various conditions on a comprehensive range of public and self-recorded datasets, showing state-of-the-art results and providing useful insights into some unique aspects. Lastly, we make available CleanerPPG, a collection of human-verified ground truth peak/heart-beat annotations for existing rPPG datasets. These verified annotations should make future evaluations and benchmarking of rPPG algorithms more accurate, standardized and fair.

26 July 2021 in IEEE Journal of Biomedical and Health Informatics
Verified
Journal Article
Closed access
ZYZhao Yin
Zhao Yin
VGVictor Geraedts
Victor Geraedts
ZWZiqi Wang
Ziqi Wang
MCMaria Fiorella Contarino
Maria Fiorella Contarino
HDHamdi Dibeklioglu
Hamdi Dibeklioglu
Jan van GemertJan van Gemert
Jan van Gemert
Parkinson’s disease ( PD ) diagnosis is based on clinical criteria, i.e., bradykinesia, rest tremor, rigidity, etc. Assessment of the severity of PD symptoms with clinical rating scales, however, is subject to inter-rater variability. In this paper, we propose a deep learning based automatic PD diagnosis method using videos to assist the diagnosis in clinical practices. We deploy a 3D Convolutional Neural Network ( CNN ) as the baseline approach for the PD severity classification and show the effectiveness. Due to the lack of data in clinical field, we explore the possibility of transfer learning from non-medical dataset and show that PD severity classification can benefit from it. To bridge the domain discrepancy between medical and non-medical datasets, we let the network focus more on the subtle temporal visual cues, i.e., the frequency of tremors, by designing a Temporal Self-Attention ( TSA ) mechanism. Seven tasks from the Movement Disorders Society - Unified PD rating scale ( MDS-UPDRS ) part III are investigated, which reveal the symptoms of bradykinesia and postural tremors. Furthermore, we propose a multi-domain learning method to predict the patient-level PD severity through task-assembling. We show the effectiveness of TSA and task-assembling method on our PD video dataset empirically. We achieve the best MCC of 0.55 on binary task-level and 0.39 on three-class patient-level classification.

28 December 2022 in Sensors
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Journal Article
Open access
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Marian BittnerMarian Bittner
Marian Bittner
WYWei-Tse Yang
Wei-Tse Yang
XZXucong Zhang
Xucong Zhang
ASAjay Seth
Ajay Seth
Jan van GemertJan van Gemert
Jan van Gemert
FHFrans C.T. Van Der Helm
Frans C.T. Van Der Helm
Markerless estimation of 3D Kinematics has the great potential to clinically diagnose and monitor movement disorders without referrals to expensive motion capture labs; however, current approaches are limited by performing multiple de-coupled steps to estimate the kinematics of a person from videos. Most current techniques work in a multi-step approach by first detecting the pose of the body and then fitting a musculoskeletal model to the data for accurate kinematic estimation. Errors in training data of the pose detection algorithms, model scaling, as well the requirement of multiple cameras limit the use of these techniques in a clinical setting. Our goal is to pave the way toward fast, easily applicable and accurate 3D kinematic estimation. To this end, we propose a novel approach for direct 3D human kinematic estimation D3KE from videos using deep neural networks. Our experiments demonstrate that the proposed end-to-end training is robust and outperforms 2D and 3D markerless motion capture based kinematic estimation pipelines in terms of joint angles error by a large margin (35% from 5.44 to 3.54 degrees). We show that D3KE is superior to the multi-step approach and can run at video framerate speeds. This technology shows the potential for clinical analysis from mobile devices in the future.

14 May 2021
Verified
Book Chapter
Closed access
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BYBurak Yildiz
Burak Yildiz
HHHayley Hung
Hayley Hung
JKJesse Krijthe
Jesse Krijthe
CLCynthia C. S. Liem
Cynthia C. S. Liem
MLMarco Loog
Marco Loog
Jan van GemertJan van Gemert
Jan van Gemert

5 November 2024
Verified
Book Chapter
Closed access
PDF file
CECasper van Engelenburg
Casper van Engelenburg
FMFatemeh Mostafavi
Fatemeh Mostafavi
EKEmanuel Kuhn
Emanuel Kuhn
YJYuntae Jeon
Yuntae Jeon
MFMichael Franzen
Michael Franzen
SKSeyran Khademi
Seyran Khademi

23 December 2019 in IEEE Access
Verified
Journal Article
Open access
MRMarcos Baptista Ríos
Marcos Baptista Ríos
RLRoberto Javier López-Sastre
Roberto Javier López-Sastre
FHFabian Caba Heilbron
Fabian Caba Heilbron
Jan van GemertJan van Gemert
Jan van Gemert
FAFrancisco Javier Acevedo
Francisco Javier Acevedo
SMSaturnino Maldonado
Saturnino Maldonado
The Online Action Detection (OAD) problem needs to be revisited. Unlike traditional offline action detection approaches, where the evaluation metrics are clear and well established, in the OAD setting we find very few works and no consensus on the evaluation protocols to be used. In this work we propose to rethink the OAD scenario, clearly defining the problem itself and the main characteristics that the models which are considered online must comply with. We also introduce a novel metric: the Instantaneous Accuracy (IA). This new metric exhibits an online nature and solves most of the limitations of the previous metrics. We conduct a thorough experimental evaluation on 3 challenging datasets, where the performance of various baseline methods is compared to that of the state-of-the-art. Our results confirm the problems of the previous evaluation protocols, and suggest that an IA-based protocol is more adequate to the online scenario. The baselines models and a development kit with the novel evaluation protocol will be made publicly available.