Jonathan M Loree

Dr. Jonathan M Loree

orcid

Research Focus & Metrics

Academic Career Length

21Years (2006-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 October 2019 in JAMA Oncology
Verified
Journal Article
Open access
PDF file
JLJonathan M Loree
Jonathan M Loree
SASeerat Anand
Seerat Anand
ADArvind Dasari
Arvind Dasari
JUJoseph M. Unger
Joseph M. Unger
AGAnirudh Gothwal
Anirudh Gothwal
KRKanwal Raghav
Kanwal Raghav
Racial disparities in health care and biomedical research are multidimensional and originate in factors that span society and medicine.1-4 Racial diversity in clinical trials serves as a metric of societal equality and access to health care, while also allowing assessment of biologic differences that may determine differential efficacy of drugs. This is particularly important in racially pluralistic societies such as the United States because studies have demonstrated survival differences from cancer by race, even after controlling for socioeconomic and treatment differences.5-7 Unfortunately, trial populations frequently do not represent the population they are intended to emulate. Hispanic and black patients with cancer have lower enrollment rates on clinical trials than whites in the United States.8 This disparity prevents minorities from sharing the benefits of scientific advances and makes trial results less generalizable. In addition, racially associated genetic variation can be an important determinant of drug metabolism and response.9 Well-designed trials need to be able to assess racial differences in metabolism and biomarker prevalence that affect clinical outcomes.10 Organizations such as the National Institutes of Health (NIH) and the US Food and Drug Administration (FDA) have recognized the importance of this issue and have taken steps to increase reporting and representation of minorities in research; however, it remains unclear how these efforts have affected racial diversity in oncology trials.11,12

1 June 2020 in JAMA Oncology
Verified
Journal Article
Closed access
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ECEric X. Chen
Eric X. Chen
DJDerek J. Jonker
Derek J. Jonker
JLJonathan M Loree
Jonathan M Loree
HKHagen F. Kennecke
Hagen F. Kennecke
SBScott R. Berry
Scott R. Berry
COChris J. O’cAllaghan
Chris J. O’cAllaghan
Colorectal cancer is the second leading cause of cancer death worldwide, accounting for approximately 880 000 deaths in 2018.1 According to the American Cancer Society, there are expected to be 51 020 deaths from advanced colorectal cancer in 2019 in the United States.2 For most patients with advanced colorectal cancer, systemic therapy is the main treatment modality with median overall survival (OS) approaching 30 months in clinical trials.3,4

11 March 2019 in Cancer
Verified
Journal Article
Open access
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AWAlexandra N. Willauer
Alexandra N. Willauer
YLYusha Liu
Yusha Liu
APAllan A. L. Pereira
Allan A. L. Pereira
MLMichael Lam
Michael Lam
JMJeffrey S. Morris
Jeffrey S. Morris
JLJonathan M Loree
Jonathan M Loree
Background: Colorectal cancer (CRC) incidence is increasing in adults younger than 50 years. This study evaluated clinical and molecular features to identify those features unique to early‐onset CRC that differentiate these patients from patients 50 years old or older. Methods: Baseline characteristics were evaluated according to the CRC onset age with 3 independent cohorts. A fourth cohort was used to describe the impact of age on the consensus molecular subtype (CMS) prevalence. Results: This retrospective review of more than 36,000 patients with CRC showed that early‐onset patients were more likely to have microsatellite instability ( P = .038), synchronous metastatic disease ( P = .009), primary tumors in the distal colon or rectum ( P < .0001), and fewer BRAF V600 mutations ( P < .001) in comparison with patients 50 years old or older. Patients aged 18 to 29 years had fewer adenomatous polyposis coli (APC) mutations (odds ratio [OR], 0.56; 95% confidence interval [CI], 0.35‐0.90; P = .015) and an increased prevalence of signet ring histology (OR, 4.89; 95% CI, 3.23‐7.39; P < .0001) in comparison with other patients younger than 50 years. In patients younger than 40 years, CMS1 was the most common subtype, whereas CMS3 and CMS4 were uncommon ( P = .003). CMS2 was relatively stable across age groups. Early‐onset patients with inflammatory bowel disease were more likely to have mucinous or signet ring histology (OR, 5.54; 95% CI, 2.24‐13.74; P = .0004) and less likely to have APC mutations (OR, 0.24; 95% CI, 0.07‐0.75; P = .019) in comparison with early‐onset patients without predisposing conditions. Conclusions: Early‐onset CRC is not only distinct from traditional CRC: special consideration should be given to and further investigations should be performed for both very young patients with CRC (18‐29 years) and those with predisposing conditions. The etiology of the high rate of CMS1 in patients younger than 40 years deserves further exploration.

15 July 2022 in Journal of Clinical Oncology
Verified
Journal Article
Open access
MMMidhun Malla
Midhun Malla
JLJonathan M Loree
Jonathan M Loree
Pashtoon Murtaza KasiPashtoon Murtaza Kasi
Pashtoon Murtaza Kasi
APAparna Parikh
Aparna Parikh
There exists a tremendous opportunity in identifying and determining the appropriate predictive and prognostic biomarker(s) for risk stratification of patients with colorectal cancers (CRCs). Circulating tumor DNA (ctDNA) has emerged as a promising prognostic and possibly predictive biomarker in the personalized management of patients with CRCs. The disease is particularly suited to a liquid biopsy–based approach since there is a great deal of shedding of circulating tumor fragments (cells, DNA, methylation markers, etc). ctDNA has been shown to have several potential applications, including detecting minimal residual disease (MRD), monitoring for early recurrence, molecular profiling, and therapeutic response prediction. The utility of ctDNA has broadened from its initial use in the advanced/metastatic setting for molecular profiling and detection of acquired resistance mechanisms, toward identifying MRD, as well as early detection. Prospective studies such as CIRCULATE, COBRA, Dynamic II/III, and ACT3 are underway in the MRD setting to further understand how ctDNA may be used to inform clinical decision making using both tumor-informed and tumor-agnostic platforms. These prospective studies use ctDNA to guide management of patients with CRC and will be critical to help guide how and where ctDNA should or should not be used in clinical decision making. It is also important to understand that there are different types of ctDNA liquid biopsy platforms, each with advantages and disadvantages in different clinical indications. This review provides an overview of the current and evolving use of ctDNA in CRC.

28 February 2018 in Clinical Cancer Research
Verified
Journal Article
Closed access
JLJonathan M Loree
Jonathan M Loree
Allan PereiraAllan Pereira
Allan Pereira
MLMichael Lam
Michael Lam
AWAlexandra N. Willauer
Alexandra N. Willauer
KRKanwal Raghav
Kanwal Raghav
SKScott Kopetz
Scott Kopetz
Purpose: Colorectal cancers are classified as right/left-sided based on whether they occur before/after the splenic flexure, with established differences in molecular subtypes and outcomes. However, it is unclear if this division is optimal and whether precise tumor location provides further information.Experimental Design: In 1,876 patients with colorectal cancer, we compared mutation prevalence and overall survival (OS) according to side and location. Consensus molecular subtype (CMS) was compared in a separate cohort of 608 patients.Results: Mutation prevalence differed by side and location for TP53, KRAS, BRAFV600, PIK3CA, SMAD4, CTNNB1, GNAS, and PTEN. Within left- and right-sided tumors, there remained substantial variations in mutation rates. For example, within right-sided tumors, RAS mutations decreased from 70% for cecal, to 43% for hepatic flexure location (P = 0.0001), while BRAFV600 mutations increased from 10% to 22% between the same locations (P < 0.0001). Within left-sided tumors, the sigmoid and rectal region had more TP53 mutations (P = 0.027), less PIK3CA (P = 0.0009), BRAF (P = 0.0033), or CTNNB1 mutations (P < 0.0001), and less MSI (P < 0.0001) than other left-sided locations. Despite this, a left/right division preceding the transverse colon maximized prognostic differences by side and transverse colon tumors had K-modes mutation clustering that appeared more left than right sided. CMS profiles showed a decline in CMS1 and CMS3 and rise in CMS2 prevalence moving distally.Conclusions: Current right/left classifications may not fully recapitulate regional variations in tumor biology. Specifically, the sigmoid-rectal region appears unique and the transverse colon is distinct from other right-sided locations. Clin Cancer Res; 24(5); 1062–72. ©2017 AACR.See related commentary by Dienstmann, p. 989

1 February 2018 in Cancer Discovery
Verified
Journal Article
Closed access
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JSJohn H Strickler
John H Strickler
JLJonathan M Loree
Jonathan M Loree
LALeanne G. Ahronian
Leanne G. Ahronian
APAparna R. Parikh
Aparna R. Parikh
DNDonna Niedzwiecki
Donna Niedzwiecki
SKScott Kopetz
Scott Kopetz
“Liquid biopsy” approaches analyzing cell-free DNA (cfDNA) from the blood of patients with cancer are increasingly utilized in clinical practice. However, it is not yet known whether cfDNA sequencing from large cohorts of patients with cancer can detect genomic alterations at frequencies similar to those observed by direct tumor sequencing, and whether this approach can generate novel insights. Here, we report next-generation sequencing data from cfDNA of 1,397 patients with colorectal cancer. Overall, frequencies of genomic alterations detected in cfDNA were comparable to those observed in three independent tissue-based colorectal cancer sequencing compendia. Our analysis also identified a novel cluster of extracellular domain (ECD) mutations in EGFR, mediating resistance by blocking binding of anti-EGFR antibodies. Patients with EGFR ECD mutations displayed striking tumor heterogeneity, with 91% harboring multiple distinct resistance alterations (range, 1–13; median, 4). These results suggest that cfDNA profiling can effectively define the genomic landscape of cancer and yield important biological insights. Significance: This study provides one of the first examples of how large-scale genomic profiling of cfDNA from patients with colorectal cancer can detect genomic alterations at frequencies comparable to those observed by direct tumor sequencing. Sequencing of cfDNA also generated insights into tumor heterogeneity and therapeutic resistance and identified novel EGFR ectodomain mutations. Cancer Discov; 8(2); 164–73. ©2017 AACR. This article is highlighted in the In This Issue feature, p. 127