Patryk Rybczyński

Mr. Patryk Rybczyński

orcid

Research Focus & Metrics

Academic Career Length

7Years (2020-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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6 January 2021 in Materials
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KMKinga Mylkie
Kinga Mylkie
PNPaweł Nowak
Paweł Nowak
PRPatryk Rybczyński
Patryk Rybczyński
MZMarta Ziegler-Borowska
Marta Ziegler-Borowska
Since their discovery, magnetic nanoparticles (MNPs) have become materials with great potential, especially considering the applications of biomedical sciences. A series of works on the preparation, characterization, and application of MNPs has shown that the biological activity of such materials depends on their size, shape, core, and shell nature. Some of the most commonly used MNPs are those based on a magnetite core. On the other hand, synthetic biopolymers are used as a protective surface coating for these nanoparticles. This review describes the advances in the field of polymer-coated MNPs for protein immobilization over the past decade. General methods of MNP preparation and protein immobilization are presented. The most extensive section of this article discusses the latest work on the use of polymer-coated MNPs for the physical and chemical immobilization of three types of proteins: enzymes, antibodies, and serum proteins. Where possible, the effectiveness of the immobilization and the activity and use of the immobilized protein are reported. Finally, the information available in the peer-reviewed literature and the application perspectives for the MNP-immobilized protein systems are summarized as well.

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PRPatryk Rybczyński
Patryk Rybczyński
ASAleksander Smolarkiewicz-Wyczachowski
Aleksander Smolarkiewicz-Wyczachowski
JPJaroslaw Piskorz
Jaroslaw Piskorz
Szymon BocianSzymon Bocian
Szymon Bocian
MZMarta Ziegler-Borowska
Marta Ziegler-Borowska
AKAnna Kaczmarek-Kędziera
Anna Kaczmarek-Kędziera
The present study is devoted to the combined experimental and theoretical description of the photophysical properties and photodegradation of the new boron-dipyrromethene (BODIPY) derivatives obtained recently for biomedical applications, such as bacteria photoinactivation (Piskorz et al., Dyes and Pigments 2020, 178, 108322). Absorption and emission spectra for a wide group of solvents of different properties for the analyzed BODIPY derivatives were investigated in order to verify their suitability for photopharmacological applications. Additionally, the photostability of the analyzed systems were thoroughly determined. The exposition to the UV light was found first to cause the decrease in the most intensive absorption band and the appearance of the hypsochromically shifted band of similar intensity. On the basis of the chromatographic and computational study, this effect was assigned to the detachment of the iodine atoms from the BODIPY core. After longer exposition to UV light, photodegradation occurred, leading to the disappearance of the intensive absorption bands and the emergence of small intensity signals in the strongly blue-shifted range of the spectrum. Since the most intensive bands in original dyes are ascribed to the molecular core bearing the BF2 moiety, this result can be attributed to the significant cleavage of the BF2 ring. In order to fully characterize the obtained molecules, the comprehensive computational chemistry study was performed. The influence of the intermolecular interactions for their absorption in solution was analyzed. The theoretical data entirely support the experimental outcomes.

26 March 2021 in Structural Chemistry
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PRPatryk Rybczyński
Patryk Rybczyński
AKAnna Kaczmarek-Kędziera
Anna Kaczmarek-Kędziera
The object of the present study are BODIPY molecules obtained previously by Piskorz et al. (Dyes Pigm. 178:108322, 2020) for their antimicrobial activity. Structural analysis of the BODIPY dimers is presented in context of the aggregation influence on the photophysical properties. The thorough investigation of the nature of intermolecular interaction in the representative BODIPY dimers is provided together with the decomposition of the interaction energy into the components of well-defined origin according to SAPT procedure. For the model BODIPY systems the careful examination of the interaction nature for the dimer structure based on experimental crystal study as well as fully optimized is given. The tendencies observed in the model dimers are further on investigated for two pairs of BODIPY systems designed for biomedical application. The analyzed molecules are shown to maximize the mutual interaction by the optimization of the stacking dispersion contacts between the aromatic rings of the molecules, therefore producing stable dimers. The estimation of SAPT0 interaction energy components confirms the dominating dispersion character arising from mutual BODIPY core contacts. The influence of the dimerization process on the photophysical properties of the systems studied theoretically depends to the high extend on the dimerization mode and is significant for parallel and antiparallel dispersion-governed dimers.

2 March 2021 in Materials
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Halina KaczmarekHalina Kaczmarek
Halina Kaczmarek
PRPatryk Rybczyński
Patryk Rybczyński
PMPiotr Maćczak
Piotr Maćczak
ASAleksander Smolarkiewicz-Wyczachowski
Aleksander Smolarkiewicz-Wyczachowski
MZMarta Ziegler-Borowska
Marta Ziegler-Borowska
Chitosan was used as a protective matrix for the photosensitive dye-squaraine (2,4-bis[4-(dimethylamino)phenyl]cyclobutane-1,3-diol). The physicochemical properties of the obtained systems, both in solution and in a solid-state, were investigated. However, it was found that diluted chitosan solutions with a few percent additions of dye show an intense fluorescence, which is suppressed in the solid-state. This is related to the morphology of the heterogeneous modified chitosan films. The important advantage of using a biopolymer matrix is the prevention of dye degradation under the influence of high energy ultraviolet (UV) radiation while the dye presence improves the chitosan heat resistance. It is caused by mutual interactions between macromolecules and dye. Owing to the protective action of chitosan, the dye release in liquid medium is limited. Chitosan solutions with a few percent additions of squaraine can be used in biomedical imaging thanks to the ability to emit light, while chitosan films can be protective coatings resistant to high temperatures and UV radiation.

22 April 2020 in Molecules
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MZMarta Ziegler-Borowska
Marta Ziegler-Borowska
KMKinga Mylkie
Kinga Mylkie
PNPaweł Nowak
Paweł Nowak
PRPatryk Rybczyński
Patryk Rybczyński
Adam SikoraAdam Sikora
Adam Sikora
AKAnna Kaczmarek-Kędziera
Anna Kaczmarek-Kędziera
Binding and transport of ligands is one of the most important functions of human blood serum proteins. Human serum albumin is found in plasma at the highest concentration. Because of this, it is important to study protein–drug interactions for this albumin. Since there is no single model describing this interaction, it is necessary to measure it for each active substance. Drug binding should also be studied in conditions that simulate pathological conditions of the body, i.e., after oxidative stress. Due to this, it is expected that the methods for testing these interactions need to be easy and fast. In this study, albumin immobilized on magnetic nanoparticles was successfully applied in the study of protein–drug binding. Ketoprofen was selected as a model drug and interactions were tested under normal conditions and artificially induced oxidative stress. The quality of obtained results for immobilized protein was confirmed with those for free albumin and literature data. It was shown that the type of magnetic core coverage does not affect the quality of the obtained results. In summary, a new, fast, effective, and universal method for testing protein–drug interactions was proposed, which can be performed in most laboratories.

20 January 2026 in Organic Chemistry Frontiers
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PRPatryk Rybczyński
Patryk Rybczyński
MGManuela Grelich-Mucha
Manuela Grelich-Mucha
EPElizaveta F. Petrusevich
Elizaveta F. Petrusevich
DPDamian Plazuk
Damian Plazuk
Liliana DobrzanskaLiliana Dobrzanska
Liliana Dobrzanska
Joanna Olesiak-BanskaJoanna Olesiak-Banska
Joanna Olesiak-Banska
We report the synthesis and photophysical studies of quadrupolar dyes based on a new core bearing two BF 2 moieties.