Thomas Martinetz

Prof. Dr. Thomas Martinetz

Institute for Neuro and Bioinformatics, University of Lübeck, 23562 Lübeck, Germany
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Research Focus & Metrics

Academic Career Length

37Years (1990-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 August 2010 in Journal of Vision
Verified
Journal Article
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MDMichael Dorr
Michael Dorr
Thomas MartinetzThomas Martinetz
Thomas Martinetz
KGKarl R. Gegenfurtner
Karl R. Gegenfurtner
EBErhardt Barth
Erhardt Barth
How similar are the eye movement patterns of different subjects when free viewing dynamic natural scenes? We collected a large database of eye movements from 54 subjects on 18 high-resolution videos of outdoor scenes and measured their variability using the Normalized Scanpath Saliency, which we extended to the temporal domain. Even though up to about 80% of subjects looked at the same image region in some video parts, variability usually was much greater. Eye movements on natural movies were then compared with eye movements in several control conditions. “Stop-motion” movies had almost identical semantic content as the original videos but lacked continuous motion. Hollywood action movie trailers were used to probe the upper limit of eye movement coherence that can be achieved by deliberate camera work, scene cuts, etc. In a “repetitive” condition, subjects viewed the same movies ten times each over the course of 2 days. Results show several systematic differences between conditions both for general eye movement parameters such as saccade amplitude and fixation duration and for eye movement variability. Most importantly, eye movements on static images are initially driven by stimulus onset effects and later, more so than on continuous videos, by subject-specific idiosyncrasies; eye movements on Hollywood movies are significantly more coherent than those on natural movies. We conclude that the stimuli types often used in laboratory experiments, static images and professionally cut material, are not very representative of natural viewing behavior. All stimuli and gaze data are publicly available at http://www.inb.uni-luebeck.de/tools-demos/gaze.

11 January 2021 in Sensors
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Journal Article
Open access
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Hammam AlshazlyHammam Alshazly
Hammam Alshazly
CLChristoph Linse
Christoph Linse
EBErhardt Barth
Erhardt Barth
Thomas MartinetzThomas Martinetz
Thomas Martinetz
This paper explores how well deep learning models trained on chest CT images can diagnose COVID-19 infected people in a fast and automated process. To this end, we adopted advanced deep network architectures and proposed a transfer learning strategy using custom-sized input tailored for each deep architecture to achieve the best performance. We conducted extensive sets of experiments on two CT image datasets, namely, the SARS-CoV-2 CT-scan and the COVID19-CT. The results show superior performances for our models compared with previous studies. Our best models achieved average accuracy, precision, sensitivity, specificity, and F1-score values of 99.4%, 99.6%, 99.8%, 99.6%, and 99.4% on the SARS-CoV-2 dataset, and 92.9%, 91.3%, 93.7%, 92.2%, and 92.5% on the COVID19-CT dataset, respectively. For better interpretability of the results, we applied visualization techniques to provide visual explanations for the models’ predictions. Feature visualizations of the learned features show well-separated clusters representing CT images of COVID-19 and non-COVID-19 cases. Moreover, the visualizations indicate that our models are not only capable of identifying COVID-19 cases but also provide accurate localization of the COVID-19-associated regions, as indicated by well-trained radiologists.

24 September 2019 in Sensors
Verified
Journal Article
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Hammam AlshazlyHammam Alshazly
Hammam Alshazly
CLChristoph Linse
Christoph Linse
EBErhardt Barth
Erhardt Barth
Thomas MartinetzThomas Martinetz
Thomas Martinetz
The recognition performance of visual recognition systems is highly dependent on extracting and representing the discriminative characteristics of image data. Convolutional neural networks (CNNs) have shown unprecedented success in a variety of visual recognition tasks due to their capability to provide in-depth representations exploiting visual image features of appearance, color, and texture. This paper presents a novel system for ear recognition based on ensembles of deep CNN-based models and more specifically the Visual Geometry Group (VGG)-like network architectures for extracting discriminative deep features from ear images. We began by training different networks of increasing depth on ear images with random weight initialization. Then, we examined pretrained models as feature extractors as well as fine-tuning them on ear images. After that, we built ensembles of the best models to further improve the recognition performance. We evaluated the proposed ensembles through identification experiments using ear images acquired under controlled and uncontrolled conditions from mathematical analysis of images (AMI), AMI cropped (AMIC) (introduced here), and West Pomeranian University of Technology (WPUT) ear datasets. The experimental results indicate that our ensembles of models yield the best performance with significant improvements over the recently published results. Moreover, we provide visual explanations of the learned features by highlighting the relevant image regions utilized by the models for making decisions or predictions.

8 December 2019 in Symmetry
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Journal Article
Open access
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Hammam AlshazlyHammam Alshazly
Hammam Alshazly
CLChristoph Linse
Christoph Linse
EBErhardt Barth
Erhardt Barth
Thomas MartinetzThomas Martinetz
Thomas Martinetz
Ear recognition is an active research area in the biometrics community with the ultimate goal to recognize individuals effectively from ear images. Traditional ear recognition methods based on handcrafted features and conventional machine learning classifiers were the prominent techniques during the last two decades. Arguably, feature extraction is the crucial phase for the success of these methods due to the difficulty in designing robust features to cope with the variations in the given images. Currently, ear recognition research is shifting towards features extracted by Convolutional Neural Networks (CNNs), which have the ability to learn more specific features robust to the wide image variations and achieving state-of-the-art recognition performance. This paper presents and compares ear recognition models built with handcrafted and CNN features. First, we experiment with seven top performing handcrafted descriptors to extract the discriminating ear image features and then train Support Vector Machines (SVMs) on the extracted features to learn a suitable model. Second, we introduce four CNN based models using a variant of the AlexNet architecture. The experimental results on three ear datasets show the superior performance of the CNN based models by 22%. To further substantiate the comparison, we perform visualization of the handcrafted and CNN features using the t-distributed Stochastic Neighboring Embedding (t-SNE) visualization technique and the characteristics of features are discussed. Moreover, we conduct experiments to investigate the symmetry of the left and right ears and the obtained results on two datasets indicate the existence of a high degree of symmetry between the ears, while a fair degree of asymmetry also exists.

14 September 2020 in IEEE Access
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Journal Article
Open access
Hammam AlshazlyHammam Alshazly
Hammam Alshazly
CLChristoph Linse
Christoph Linse
EBErhardt Barth
Erhardt Barth
Thomas MartinetzThomas Martinetz
Thomas Martinetz
This paper employs state-of-the-art Deep Convolutional Neural Networks (CNNs), namely AlexNet, VGGNet, Inception, ResNet and ResNeXt in a first experimental study of ear recognition on the unconstrained EarVN1.0 dataset. As the dataset size is still insufficient to train deep CNNs from scratch, we utilize transfer learning and propose different domain adaptation strategies. The experiments show that our networks, which are fine-tuned using custom-sized inputs determined specifically for each CNN architecture, obtain state-of-the-art recognition performance where a single ResNeXt101 model achieves a rank-1 recognition accuracy of 93.45%. Moreover, we achieve the best rank-1 recognition accuracy of 95.85% using an ensemble of fine-tuned ResNeXt101 models. In order to explain the performance differences between models and make our results more interpretable, we employ the t-SNE algorithm to explore and visualize the learned features. Feature visualizations show well-separated clusters representing ear images of the different subjects. This indicates that discriminative and ear-specific features are learned when applying our proposed learning strategies.

1 September 2016 in PLOS Computational Biology
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MCMichael Schellenberger Costa
Michael Schellenberger Costa
AWArne Weigenand
Arne Weigenand
HNHong-Viet V. Ngo
Hong-Viet V. Ngo
LMLisa Marshall
Lisa Marshall
JBJan Born
Jan Born
JCJens Christian Claussen
Jens Christian Claussen
Few models exist that accurately reproduce the complex rhythms of the thalamocortical system that are apparent in measured scalp EEG and at the same time, are suitable for large-scale simulations of brain activity. Here, we present a neural mass model of the thalamocortical system during natural non-REM sleep, which is able to generate fast sleep spindles (12–15 Hz), slow oscillations (<1 Hz) and K-complexes, as well as their distinct temporal relations, and response to auditory stimuli. We show that with the inclusion of detailed calcium currents, the thalamic neural mass model is able to generate different firing modes, and validate the model with EEG-data from a recent sleep study in humans, where closed-loop auditory stimulation was applied. The model output relates directly to the EEG, which makes it a useful basis to develop new stimulation protocols. Sleep plays a pivotal role for the consolidation of memory. While REM sleep had originally been the focus of research due to its similarity with wakefulness, more recent studies suggest that different sleep stages are responsible for the consolidation of different types of memory. To better understand the changes in neuronal dynamics between the different sleep stages, neural mass models are a valuable tool, as they relate directly to the large-scale dynamics measured by an EEG. Here, we present a model of the sleeping thalamocortical system. We first show that the isolated thalamic submodule is able to generate different oscillatory behavior found in vivo. Furthermore, the full thalamocortical model reproduces the EEG of sleep stages N2 and N3 and preserves the temporal relationship between cortical K-complexes/slow oscillations and thalamic sleep spindles. A comparison with event related potential data from a recent sleep study in humans demonstrates its possible application in predicting the outcome of external stimulation on EEG rhythms. Our study shows, that a neural mass model incorporating few key mechanisms is sufficient to reproduce the complex brain dynamics observed during sleep.