Dan Zhu

Prof. Dan Zhu

College of Life Science, Qingdao Agricultural University
+1
orcid

Research Focus & Metrics

Academic Career Length

7Years (2020-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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28 May 2020 in Plant Molecular Biology
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WKWenwen Kong
Wenwen Kong
Michelle YooMichelle Yoo
Michelle Yoo
DZDan Zhu
Dan Zhu
JNJerald D. Noble
Jerald D. Noble
TKTheresa M. Kelley
Theresa M. Kelley
Sixue ChenSixue Chen
Sixue Chen

Verified
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LDLisa David
Lisa David
JKJianing Kang
Jianing Kang
DDDaniel Dufresne
Daniel Dufresne
DZDan Zhu
Dan Zhu
Sixue ChenSixue Chen
Sixue Chen
Systemic Acquired Resistance (SAR) improves immunity of plant systemic tissue after local exposure to a pathogen. Guard cells that form stomatal pores on leaf surfaces recognize bacterial pathogens via pattern recognition receptors, such as Flagellin Sensitive 2 (FLS2). However, how SAR affects stomatal immunity is not known. In this study, we aim to reveal molecular mechanisms underlying the guard cell response to SAR using multi-omics of proteins, metabolites and lipids. Arabidopsis plants previously exposed to pathogenic bacteria Pseudomonas syringae pv. tomato DC3000 (Pst) exhibit an altered stomatal response compared to control plants when they are later exposed to the bacteria. Reduced stomatal apertures of SAR primed plants lead to decreased number of bacteria in leaves. Multi-omics has revealed molecular components of SAR response specific to guard cells functions, including potential roles of reactive oxygen species (ROS) and fatty acid signaling. Our results show an increase in palmitic acid and its derivative in the primed guard cells. Palmitic acid may play a role as an activator of FLS2, which initiates stomatal immune response. Improved understanding of how SAR signals affect stomatal immunity can aid biotechnology and marker-based breeding of crops for enhanced disease resistance.

4 March 2025 in Plants
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LHLei Han
Lei Han
LGLerong Ge
Lerong Ge
LFLin Fei
Lin Fei
CHChengwei Huang
Chengwei Huang
YLYilin Li
Yilin Li
LZLonggang Zhao
Longgang Zhao
Salt stress impedes normal development, compromises plant quality, and reduces crop yield. The germination phase in soybean marks the initial stage of its growth cycle. Characterizing salt tolerance during this period can help stimulate soybean growth in natural environments and aid the rapid screening of salt-tolerant soybean varieties. Our study characterized the salt tolerance of 36 soybean germplasms in culture dishes during the germination period. Soybeans were subjected to varying concentrations (0, 60, 120, and 180 mmol/L) of NaCl solution to simulate diverse levels of salt stress, and parameters such as germination energy, germination rate, and root length were measured. Statistical techniques such as analysis of variance, membership function, cluster analysis, and quadratic regression equations were used, and the salt tolerance of these 36 soybean germplasms was determined. The critical indicators and the most effective screening concentration for assessing the germination salt tolerance of soybean were identified. Soybeans tolerated low salt concentrations; however, salt concentrations greater than 120 mmol/L significantly inhibited germination indicators. The germination rate, germination vigor, vitality index, seed germination index, total fresh weight, and total dry weight could be used to identify salt tolerance. The semi-lethal concentration of soybean was 155.4 mmol/L, and the coefficient of variation was 20.00%, indicating that it could be used as a screening concentration for evaluating salt tolerance during soybean germination. A total of 36 soybean varieties were classified into four salt tolerance levels through cluster analysis. QN-27, QN-35, and QN-36 were highly salt-resistant materials, and QN-2, QN-17, and QN-19 were salt-sensitive materials. Characterizing salt tolerance during soybean germination can facilitate the selection and breeding of salt-tolerant soybean varieties. Future research utilizing this approach can aid in the selection of soybean varieties with salinity tolerance.

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Xuemei ZhangXuemei Zhang
Xuemei Zhang
BTBowen Tan
Bowen Tan
DZDan Zhu
Dan Zhu
DDDaniel Dufresne
Daniel Dufresne
TJTingbo Jiang
Tingbo Jiang
Sixue ChenSixue Chen
Sixue Chen
Mesembryanthemum crystallinum (common ice plant) is a halophyte species that has adapted to extreme conditions. In this study, we cloned a McHB7 transcription factor gene from the ice plant. The expression of McHB7 was significantly induced by 500 mM NaCl and it reached the peak under salt treatment for 7 days. The McHB7 protein was targeted to the nucleus. McHB7-overexpressing in ice plant leaves through Agrobacterium-mediated transformation led to 25 times more McHB7 transcripts than the non-transformed wild type (WT). After 500 mM NaCl treatment for 7 days, the activities of superoxide dismutase (SOD) and peroxidase (POD) and water content of the transgenic plants were higher than the WT, while malondialdehyde (MDA) was decreased in the transgenic plants. A total of 1082 and 1072 proteins were profiled by proteomics under control and salt treatment, respectively, with 22 and 11 proteins uniquely identified under control and salt stress, respectively. Among the 11 proteins, 7 were increased and 4 were decreased after salt treatment. Most of the proteins whose expression increased in the McHB7 overexpression (OE) ice plants under high salinity were involved in transport regulation, catalytic activities, biosynthesis of secondary metabolites, and response to stimulus. The results demonstrate that the McHB7 transcription factor plays a positive role in improving plant salt tolerance.

14 March 2025 in Agriculture
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XJXiaofei Jia
Xiaofei Jia
ZHZhenlu Hua
Zhenlu Hua
HSHongtao Shi
Hongtao Shi
DZDan Zhu
Dan Zhu
ZHZhongzhi Han
Zhongzhi Han
LDLImiao Deng
LImiao Deng
The number of soybean pods is a key determinant of soybean yield, making accurate detection and counting essential for yield estimation, cultivation management, and variety selection. Traditional manual counting methods are labor-intensive and time-consuming, and while object detection networks are widely applied in agricultural tasks, the dense distribution and overlapping occlusion of soybean pods present significant challenges. This study developed a soybean pod detection model, YOLOv8n-POD, based on the YOLOv8n network, incorporating key innovations to address these issues. A Dense Block Backbone (DBB) enhances the model’s adaptability to the morphological diversity of soybean pods, while the Separated and Enhancement Attention Module (SEAM) in the neck section improves the representation of pod-related features in feature maps. Additionally, a Dynamic Head increases the flexibility in detecting pods of varying scales. The model achieved an average precision (AP) of 83.1%, surpassing mainstream object detection methodologies with a 5.3% improvement over YOLOv8. Tests on three public datasets further demonstrated its generalizability to other crops. The proposed YOLOv8n-POD model provides robust support for accurate detection and localization of soybean pods, essential for yield estimation and breeding strategies, and its significant theoretical and practical implications extend its applicability to other crop types, advancing agricultural automation and precision farming.

Verified
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Xuemei ZhangXuemei Zhang
Xuemei Zhang
BTBowen Tan
Bowen Tan
ZCZihan Cheng
Zihan Cheng
DZDan Zhu
Dan Zhu
TJTingbo Jiang
Tingbo Jiang
Sixue ChenSixue Chen
Sixue Chen
Mesembryanthemum crystallinum (common ice plant) is one of the facultative halophyte plants, and it serves as a model for investigating the molecular mechanisms underlying its salt stress response and tolerance. Here we cloned one of the homeobox transcription factor (TF) genes, McHB7, from the ice plant, which has 60% similarity with the Arabidopsis AtHB7. Overexpression of the McHB7 in Arabidopsis (OE) showed that the plants had significantly elevated relative water content (RWC), chlorophyll content, superoxide dismutase (SOD), and peroxidase (POD) activities after salt stress treatment. Our proteomic analysis identified 145 proteins to be significantly changed in abundance, and 66 were exclusively increased in the OE plants compared to the wild type (WT). After salt treatment, 979 and 959 metabolites were significantly increased and decreased, respectively, in the OE plants compared to the WT. The results demonstrate that the McHB7 can improve photosynthesis, increase the leaf chlorophyll content, and affect the TCA cycle by regulating metabolites (e.g., pyruvate) and proteins (e.g., citrate synthase). Moreover, McHB7 modulates the expression of stress-related proteins (e.g., superoxide dismutase, dehydroascorbate reductase, and pyrroline-5-carboxylate synthase B) to scavenge reactive oxygen species and enhance plant salt tolerance.