Alexey Kazakov

Dr. Alexey Kazakov


Research Focus & Metrics

Academic Career Length

11Years (2016-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
1 March 2019 in Biochemical and Biophysical Research Communications
Verified
Journal Article
Closed access
AAAlexandra Artyukhina
Alexandra Artyukhina
AKAlexey Kazakov
Alexey Kazakov
ASA.S. Sokolov
A.S. Sokolov
ENEkaterina Nemashkalova
Ekaterina Nemashkalova
EGE.I. Galushko
E.I. Galushko
Eugene PermyakovEugene Permyakov
Eugene Permyakov

Verified
Journal Article
Open access
PDF file
AKAlexey Kazakov
Alexey Kazakov
ASAlexander D. Sofin
Alexander D. Sofin
NANadezhda V. Avkhacheva
Nadezhda V. Avkhacheva
ADAlexander Denesyuk
Alexander Denesyuk
EDEvgeniya Deryusheva
Evgeniya Deryusheva
Eugene PermyakovEugene Permyakov
Eugene Permyakov
Interferon-β (IFN-β) is a pleiotropic cytokine used for therapy of multiple sclerosis, which is also effective in suppression of viral and bacterial infections and cancer. Recently, we reported a highly specific interaction between IFN-β and S100P lowering IFN-β cytotoxicity to cancer cells (Int J Biol Macromol. 2020; 143: 633–639). S100P is a member of large family of multifunctional Ca2+-binding proteins with cytokine-like activities. To probe selectivity of IFN-β—S100 interaction with respect to S100 proteins, we used surface plasmon resonance spectroscopy, chemical crosslinking, and crystal violet assay. Among the thirteen S100 proteins studied S100A1, S100A4, and S100A6 proteins exhibit strictly Ca2+-dependent binding to IFN-β with equilibrium dissociation constants, Kd, of 0.04–1.5 µM for their Ca2+-bound homodimeric forms. Calcium depletion abolishes the S100—IFN-β interactions. Monomerization of S100A1/A4/A6 decreases Kd values down to 0.11–1.0 nM. Interferon-α is unable of binding to the S100 proteins studied. S100A1/A4 proteins inhibit IFN-β-induced suppression of MCF-7 cells viability. The revealed direct influence of specific S100 proteins on IFN-β activity uncovers a novel regulatory role of particular S100 proteins, and opens up novel approaches to enhancement of therapeutic efficacy of IFN-β.

Verified
Journal Article
Open access
PDF file
AAAlexandra Artyukhina
Alexandra Artyukhina
AKAlexey Kazakov
Alexey Kazakov
EDEvgeniya Deryusheva
Evgeniya Deryusheva
ENEkaterina Nemashkalova
Ekaterina Nemashkalova
MSMarina Shevelyova
Marina Shevelyova
Eugene PermyakovEugene Permyakov
Eugene Permyakov
Prevention of amyloid β peptide (Aβ) deposition via facilitation of Aβ binding to its natural depot, human serum albumin (HSA), is a promising approach to preclude Alzheimer’s disease (AD) onset and progression. Previously, we demonstrated the ability of natural HSA ligands, fatty acids, to improve the affinity of this protein to monomeric Aβ by a factor of 3 (BBRC, 510(2), 248–253). Using plasmon resonance spectroscopy, we show here that another HSA ligand related to AD pathogenesis, serotonin (SRO), increases the affinity of the Aβ monomer to HSA by a factor of 7/17 for Aβ40/Aβ42, respectively. Meanwhile, the structurally homologous SRO precursor, tryptophan (TRP), does not affect HSA’s affinity to monomeric Aβ, despite slowdown of the association and dissociation processes. Crosslinking with glutaraldehyde and dynamic light scattering experiments reveal that, compared with the TRP-induced effects, SRO binding causes more marked changes in the quaternary structure of HSA. Furthermore, molecular docking reveals distinct structural differences between SRO/TRP complexes with HSA. The disintegration of the serotonergic system during AD pathogenesis may contribute to Aβ release from HSA in the central nervous system due to impairment of the SRO-mediated Aβ trapping by HSA.

12 January 2022 in Biomolecules
Verified
Journal Article
Open access
PDF file
AKAlexey Kazakov
Alexey Kazakov
EDEvgeniya Deryusheva
Evgeniya Deryusheva
ASAndrey S. Sokolov
Andrey S. Sokolov
MPMaria E. Permyakova
Maria E. Permyakova
AAAlexandra Artyukhina
Alexandra Artyukhina
Eugene PermyakovEugene Permyakov
Eugene Permyakov
Erythropoietin (EPO) is a clinically significant four-helical cytokine, exhibiting erythropoietic, cytoprotective, immunomodulatory, and cancer-promoting activities. Despite vast knowledge on its signaling pathways and physiological effects, extracellular factors regulating EPO activity remain underexplored. Here we show by surface plasmon resonance spectroscopy, that among eighteen members of Ca2+-binding proteins of the S100 protein family studied, only S100A2, S100A6 and S100P proteins specifically recognize EPO with equilibrium dissociation constants ranging from 81 nM to 0.5 µM. The interactions occur exclusively under calcium excess. Bioinformatics analysis showed that the EPO-S100 interactions could be relevant to progression of neoplastic diseases, including cancer, and other diseases. The detailed knowledge of distinct physiological effects of the EPO-S100 interactions could favor development of more efficient clinical implications of EPO. Summing up our data with previous findings, we conclude that S100 proteins are potentially able to directly affect functional activities of specific members of all families of four-helical cytokines, and cytokines of other structural superfamilies.

Verified
Journal Article
Open access
PDF file
AAAlexandra Artyukhina
Alexandra Artyukhina
AKAlexey Kazakov
Alexey Kazakov
EDEvgeniya Deryusheva
Evgeniya Deryusheva
ENEkaterina Nemashkalova
Ekaterina Nemashkalova
MSMarina Shevelyova
Marina Shevelyova
Eugene PermyakovEugene Permyakov
Eugene Permyakov
The deposition of amyloid-β peptide (Aβ) in the brain is a critical event in the progression of Alzheimer’s disease (AD). This Aβ deposition could be prevented by directed enhancement of Aβ binding to its natural depot, human serum albumin (HSA). Previously, we revealed that specific endogenous ligands of HSA improve its affinity to monomeric Aβ. We show here that an exogenous HSA ligand, ibuprofen (IBU), exerts the analogous effect. Plasmon resonance spectroscopy data evidence that a therapeutic IBU level increases HSA affinity to monomeric Aβ40/Aβ42 by a factor of 3–5. Using thioflavin T fluorescence assay and transmission electron microcopy, we show that IBU favors the suppression of Aβ40 fibrillation by HSA. Molecular docking data indicate partial overlap between the IBU/Aβ40-binding sites of HSA. The revealed enhancement of the HSA–Aβ interaction by IBU and the strengthened inhibition of Aβ fibrillation by HSA in the presence of IBU could contribute to the neuroprotective effects of the latter, previously observed in mouse and human studies of AD.

Verified
Journal Article
Open access
PDF file
AKAlexey Kazakov
Alexey Kazakov
ASAlexander D. Sofin
Alexander D. Sofin
NANadezhda V. Avkhacheva
Nadezhda V. Avkhacheva
EDEvgeniya Deryusheva
Evgeniya Deryusheva
VRVictoria A. Rastrygina
Victoria A. Rastrygina
Eugene PermyakovEugene Permyakov
Eugene Permyakov
Interferon-β (IFN-β) is a pleiotropic cytokine secreted in response to various pathological conditions and is clinically used for therapy of multiple sclerosis. Its application for treatment of cancer, infections and pulmonary diseases is limited by incomplete understanding of regulatory mechanisms of its functioning. Recently, we reported that IFN-β activity is affected by interactions with S100A1, S100A4, S100A6, and S100P proteins, which are members of the S100 protein family of multifunctional Ca2+-binding proteins possessing cytokine-like activities (Int J Mol Sci. 2020;21(24):9473). Here we show that IFN-β interacts with one more representative of the S100 protein family, the S100B protein, involved in numerous oncological and neurological diseases. The use of chemical crosslinking, intrinsic fluorescence, and surface plasmon resonance spectroscopy revealed IFN-β binding to Ca2+-loaded dimeric and monomeric forms of the S100B protein. Calcium depletion blocks the S100B–IFN-β interaction. S100B monomerization increases its affinity to IFN-β by 2.7 orders of magnitude (equilibrium dissociation constant of the complex reaches 47 pM). Crystal violet assay demonstrated that combined application of IFN-β and S100B (5–25 nM) eliminates their inhibitory effects on MCF-7 cell viability. Bioinformatics analysis showed that the direct modulation of IFN-β activity by the S100B protein described here could be relevant to progression of multiple oncological and neurological diseases.