Thirty groundwater samples were taken from Assiut’s northern outskirts. The physicochemical properties of these samples were investigated. For the evaluation of water–rock interaction, the saturation index (SI), chloro-alkaline indices (CAI1 and CAI2), Gibbs ratios for cations and anions (GC and GA), principal component analysis (PCA), and hierarchical cluster analysis (HCA) were used. (1) With the exception of five samples that were supersaturated, the rest of the groundwater samples were under-saturated with carbonate mineral dissolution (calcite, dolomite, and aragonite) and evaporite mineral dissolution (anhydrite, gypsum, halite, and sylvite). (2) The presence of ion exchange between alkali elements (Na⁺ + K⁺) and earth alkaline elements (Ca²⁺ + Mg²⁺) is explained by the positive values of the chloro-alkaline indices. (3) In four groundwater samples, negative chloro-alkaline indices suggest reverse ion exchange and an increasing alkali element content. (4) The Gibbs diagram demonstrates that, with the exception of four samples that reflect saline groundwater, the majority of the groundwater samples are freshwater recharging from the fresh surface water in the research area. (5) Groundwater types include Ca-HCO₃ (11%), Mg-HCO₃ (48%), Na-HCO₃ (23%), Mg-Cl (13%), and Na-Cl (3%). (6) The alkali, earth alkaline elements, and sulphate are the key controls on groundwater salinity, according to PCA and HCA. (7) The somewhat saline groundwater in the research area’s western desert margins should not be used since it poses a health danger to people.

An integrated approach [field, Interferometric Synthetic Aperture Radar (InSAR), hydrogeology, geodesy, and spatial analysis] was adopted to identify the nature, intensity, and spatial distribution of deformational features (sinkholes, fissures, differential settling) reported over fossil aquifers in arid lands, their controlling factors, and possible remedies. The Lower Mega Aquifer System (area 2 × 10⁶ km²) in central and northern Arabia was used as a test site. Findings suggest that excessive groundwater extraction from the fossil aquifer is the main cause of deformation: (1) deformational features correlated spatially and/or temporally with increased agricultural development and groundwater extraction, and with a decline in water levels and groundwater storage (− 3.7 ± 0.6 km³/year); (2) earthquake events (years 1985–2016; magnitude 1–5) are largely (65% of reported earthquakes) shallow (1–5 km) and increased from 1 event/year in the early 1980s (extraction 1 km³/year), up to 13 events/year in the 1990s (average annual extraction > 6.4 km³). Results indicate that faults played a role in localizing deformation given that deformational sites and InSAR-based high subsidence rates (− 4 to − 15 mm/year) were largely found within, but not outside of, NW–SE-trending grabens bound by the Kahf fault system. Findings from the analysis of Gravity Recovery and Climate Experiment solutions indicate that sustainable extraction could be attained if groundwater extraction was reduced by 3.5–4 km³/year. This study provides replicable and cost-effective methodologies for optimum utilization of fossil aquifers and for minimizing deformation associated with their use.

Flash flood hazard assessments, mitigation measures, and water harvesting efforts in desert environments are often challenged by data scarcity on the basin scale. The present study, using the Wadi Atfeh catchment as a test site, integrates remote sensing datasets with field and geoelectrical measurements to assess flash flood hazards, suggest mitigation measures, and to examine the recharge to the alluvium aquifer. The estimated peak discharge of the 13 March 2020 flood event was 97 m³/h, which exceeded the capacity of the culverts beneath the Eastern Military Highway (64 m³/h), and a new dam was suggested, where 75% of the catchment could be controlled. The monitoring of water infiltration into the alluvium aquifer using time-lapse electrical resistivity measurements along a fixed profile showed a limited connection between the wetted surficial sediments and the water table. Throughflow is probably the main source of recharge to the aquifer rather than vertical infiltration at the basin outlet. The findings suggest further measures to avoid the negative impacts of flash floods at the Wadi Atfeh catchment and similar basins in the Eastern Desert of Egypt. Furthermore, future hydrological studies in desert environments should take into consideration the major role of the throughflow in alluvium aquifer recharge.