The transcriptomic datasets of the plant model organism Arabidopsis thaliana grown in the International Space Station provided by GeneLab have been mined to isolate the impact of spaceflight microgravity on gene expressions related to root growth. A set of computational tools is used to identify the hub genes that respond differently in spaceflight with controlled lighting compared to on the ground. These computational tools based on graph-theoretic approaches are used to infer gene regulatory networks from the transcriptomic datasets. The three main algorithms used for network analyses are Least Absolute Shrinkage and Selection Operator (LASSO), Pearson correlation, and the Hyperlink-Induced Topic Search (HITS) algorithm. Graph-based spectral analyses reveal distinct properties of the spaceflight microgravity networks for the Wassilewskija (WS), Columbia (Col)-0, and mutant phytochromeD (phyD) ecotypes. The set of hub genes that are significantly altered in spaceflight microgravity are mainly involved in cell wall synthesis, protein transport, response to auxin, stress responses, and catabolic processes. Network analysis highlights five important root growth-regulating hub genes that have the highest outdegree distribution in spaceflight microgravity networks. These concerned genes coding for proteins are identified from the Gene Regulatory Networks (GRNs) corresponding to spaceflight total light environment. Furthermore, network analysis uncovers genes that encode nucleotide-diphospho-sugar interconversion enzymes that have higher transcriptional regulation in spaceflight microgravity and are involved in cell wall biosynthesis.

Spaceflight microgravity affects normal plant growth in several ways. The transcriptional dataset of the plant model organism Arabidopsis thaliana grown in the international space station is mined using graph-theoretic network analysis approaches to identify significant gene transcriptions in microgravity essential for the plant’s survival and growth in altered environments. The photosynthesis process is critical for the survival of the plants in spaceflight under different environmentally stressful conditions such as lower levels of gravity, lesser oxygen availability, low atmospheric pressure, and the presence of cosmic radiation. Lasso regression method is used for gene regulatory network inferencing from gene expressions of four different ecotypes of Arabidopsis in spaceflight microgravity related to the photosynthetic process. The individual behavior of hub-genes and stress response genes in the photosynthetic process and their impact on the whole network is analyzed. Logistic regression on centrality measures computed from the networks, including average shortest path, betweenness centrality, closeness centrality, and eccentricity, and the HITS algorithm is used to rank genes and identify interactor or target genes from the networks. Through the hub and authority gene interactions, several biological processes associated with photosynthesis and carbon fixation genes are identified. The altered conditions in spaceflight have made all the ecotypes of Arabidopsis sensitive to dehydration-and-salt stress. The oxidative and heat-shock stress-response genes regulate the photosynthesis genes that are involved in the oxidation-reduction process in spaceflight microgravity, enabling the plant to adapt successfully to the spaceflight environment.

Analyzing brain activity during mental arithmetic tasks provides insight into psychological disorders such as ADHD, dyscalculia, and autism. While most research is conducted on the static functional connectivity of the brain while performing a cognitive task, the dynamic changes of the brain, which provide meaningful information for diagnosing individual differences in cognitive tasks, are often ignored. This paper aims to classify electroencephalogram (EEG) signals for rest vs. mental arithmetic task performance, using Bayesian functional connectivity features in the sensor space as inputs into a graph convolutional network. The subject-specific (intrasubject) classification performed on 36 subjects for rest vs. mental arithmetic task performance achieved the highest subject-specific classification accuracy of 98% and an average accuracy of 91% in the beta frequency band, outperforming state-of-the-art methods. In addition, statistical analysis confirms the consistency of Bayesian functional connectivity features compared to traditional functional connectivity features. Furthermore, the graph-theoretical analysis of functional connectivity networks reveals that good-performance subjects had higher global efficiency, betweenness centrality, and closeness centrality than bad-performance subjects. The ablation study on the classification of three cognitive states (subtraction, music, and memory) achieved a classification accuracy of 97%, and visual working memory (n-back task) achieved a classification accuracy of 94%, confirming the consistency and reliability of the proposed methodology.

Multiclass motor imagery classification is essential for brain–computer interface systems such as prosthetic arms. The compressive sensing of EEG helps classify brain signals in real-time, which is necessary for a BCI system. However, compressive sensing is limited, despite its flexibility and data efficiency, because of its sparsity and high computational cost in reconstructing signals. Although the constraint of sparsity in compressive sensing has been addressed through neural networks, its signal reconstruction remains slow, and the computational cost increases to classify the signals further. Therefore, we propose a 1D-Convolutional Residual Network that classifies EEG features in the compressed (sparse) domain without reconstructing the signal. First, we extract only wavelet features (energy and entropy) from raw EEG epochs to construct a dictionary. Next, we classify the given test EEG data based on the sparse representation of the dictionary. The proposed method is computationally inexpensive, fast, and has high classification accuracy as it uses a single feature to classify without preprocessing. The proposed method is trained, validated, and tested using multiclass motor imagery data of 109 subjects from the PhysioNet database. The results demonstrate that the proposed method outperforms state-of-the-art classifiers with 96.6% accuracy.

Brain responses related to working memory originate from distinct brain areas and oscillate at different frequencies. EEG signals with high temporal correlation can effectively capture these responses. Therefore, estimating the functional connectivity of EEG for working memory protocols in different frequency bands plays a significant role in analyzing the brain dynamics with increasing memory and cognitive loads, which remains largely unexplored. The present study introduces a Bayesian structure learning algorithm to learn the functional connectivity of EEG in sensor space. Next, the functional connectivity graphs are taken as input to the graph convolutional network to classify the working memory loads. The intrasubject (subject-specific) classification performed on 154 subjects for six different verbal working memory loads produced the highest classification accuracy of 96% and average classification accuracy of 89%, outperforming state-of-the-art classification models proposed in the literature. Furthermore, the proposed Bayesian structure learning algorithm is compared with state-of-the-art functional connectivity estimation methods through intersubject and intrasubject statistical analysis of variance. The results also show that the alpha and theta bands have better classification accuracy than the beta band.

Brain responses related to working memory originate from distinct brain areas and oscillate at different frequencies. EEG signals with high temporal correlation can effectively capture these responses. Therefore, estimating the functional connectivity of EEG for working memory protocols in different frequency bands plays a significant role in analyzing the brain dynamics with increasing memory and cognitive loads, which remains largely unexplored. The present study introduces a Bayesian structure learning algorithm to learn the functional connectivity of EEG in sensor space. Next, the functional connectivity graphs are taken as input to the graph convolutional network to classify the working memory loads. The intrasubject (subject-specific) classification performed on 154 subjects for six different verbal working memory loads produced the highest classification accuracy of 96% and average classification accuracy of 89%, outperforming state-of-the-art classification models proposed in the literature. Furthermore, the proposed Bayesian structure learning algorithm is compared with state-of-the-art functional connectivity estimation methods through intersubject and intrasubject statistical analysis of variance. The results also show that the alpha and theta bands have better classification accuracy than the beta band.