Prolonged running results in lowering of the foot arch and a low arch is associated with subsequent chronic injuries. Foot posture alteration and recovery following a marathon run remain unknown. Therefore, the present study aimed to evaluate foot posture alteration following a full marathon run. The three‐dimensional foot posture data of 11 collegiate runners were obtained using an optical foot scanner system before, and immediately, 1 day, 3 days, and 8 days after a full marathon. The navicular height and arch height ratio significantly decreased from before to immediately, 1 day, 3 days, and 8 days after the marathon (navicular height: before, 44.2 ± 5.0 mm; immediately after, 39.4 ± 5.5 mm; 1 day, 37.7 ± 6.2 mm; 3 days, 38.7 ± 5.5 mm; 8 days, 37.6 ± 5.7 mm; arch height ratio: before, 18.4 ± 1.9; immediately after, 16.5 ± 2.5; 1 day, 15.7 ± 2.5; 3 days, 16.2 ± 2.6; 8 days, 15.6 ± 2.2, P < 0.001, respectively). By contrast, the dorsal height significantly increased from before and immediately after to 1 day after the marathon, and then significantly decreased until 8 days after the marathon (P < 0.001). These results indicate that the recovery patterns of the dorsal and navicular heights following a marathon did not coincide; the dorsal height rose temporally at 1 day after and subsequently decreased, but the navicular height decreased throughout the 8‐day period after the marathon. More than one week may be necessary for sufficient foot alignment recovery from marathon‐induced changes.