Their hyphal structure, the common events of hybridization and horizontal gene transfer, as well as intimate associations with prokaryotes (including endobiotic bacteria) and cooperation with eukaryotes have made fungi very flexible at the genetic, physiological, and ecological levels. It is manifested with the fungal ability to perfectly exploit existing nutrient sources and plastically fit into a changing environment. Although the links between fungi and other ecosystem components are rarely clearly visible and unambiguous, fungi can be ecosystem buffers playing a homeostatic role throughout global ecosystems, reacting to changes in various ways, not only by modifications of gene expression but also by nuclear status and “extended phenotype”. The goal of this review is to underline some ecological interactions involving fungi and other organisms and to indicate high fungal plasticity in terms of ontogenetic perspective.

Purpose of Review: Because tree seeds have been considered a low-risk pathway for the spread of plant pathogenic fungi, their international movement is not subject to strict phytosanitary regulation. However, recent studies have provided scientific evidence that the biosecurity risk of seed trade may not be as negligible as assumed. This review summarises current knowledge about seed trade activity across the world and seed-borne plant pathogenic fungi and highlights knowledge gaps that need to be filled to mitigate the risk of spreading tree pathogens via seeds. Recent Findings: Several outbreaks of severe tree diseases in natural forests and plantations worldwide have been linked to fungal pathogens spread by seed trade. Indeed, recent studies based on modern sequencing technologies have shown that tree seeds harbour highly diverse fungal communities, including well-known pathogens and fungal taxa belonging to unknown species. While it has become clear that even apparently healthy seeds can carry potentially pathogenic fungi, the likelihood of seed-borne pathogens being introduced and becoming established, spreading and causing impact in the new environment is still unclear which challenges the assessment of the phytosanitary risk posed by seed trade. Summary: Our analyses show that large amounts of tree seeds have been traded among countries and continents. Based on published literature, the risk of spreading pathogenic fungi via tree seed movement is high. However, the role of the taxonomically and functionally diverse fungal communities associated with seeds is still poorly understood. In particular, more research is needed to assess the likelihood of seed-borne fungi being transmitted to the seedlings and spreading and causing impact in the new environment.

During a survey in three declining and three healthy poplar plantations in Serbia, six different Phytophthora species were obtained. Phytophthora plurivora was the most common, followed by P. pini, P. polonica, P. lacustris, P. cactorum, and P. gonapodyides. Pathogenicity of all isolated species to four-month and one-year-old cuttings of Populus hybrid clones I-214 and Pánnonia, respectively, was tested using both a soil infestation and stem inoculation test. Isolates of P. polonica, P. × cambivora, P. cryptogea, and P. × serendipita from other host plants were included as a comparison. In the soil infestation test, the most aggressive species to clone I-214 were P. plurivora, P. × serendipita, and P. pini. On clone Pánnonia, P. gonapodyides and P. pini were the most aggressive, both causing 100% mortality, followed by P. cactorum, P. × cambivora, and P. polonica. In the underbark inoculation test, the susceptibility of both poplar clones to the different Phytophthora species was largely similar, as in the soil infestation test, with the exception of P. polonica, which proved to be only weakly pathogenic to poplar bark. The most aggressive species to clone I-214 was P. pini, while on clone Pánnonia, the longest lesions and highest disease incidence were caused by P. gonapodyides. Phytophthora cactorum and P. plurivora were pathogenic to both clones, whereas P. × cambivora showed only weak pathogenicity. The implications of these findings and possible pathways of dispersion of the pathogens are discussed.

Monochamus sartor sartor from Central European mountain ranges and M. s. urussovii from the Eurasian boreal zone are subspecies whose taxonomic statuses have been questioned. This sawyer beetle is a natural element of spruce forests but is considered to be a timber pest in spruce plantations. In this study, different sets of data (morphology, genetics and ecology) were used to verify the taxonomic status of M. sartor across its entire range. Morphologically, not only both subspecies but also European and Asian populations of M. s. urussovii were found to be distinct. Genetic data also showed that both subspecies have distinct mitochondrial haplogroups; however, divergence between them is very weak (of ca. 1%), suggesting they split very recently, possibly at the end of the Pleistocene glaciations. Species delimitation methods gave discordant results, either rejecting the species status of M. s. sartor and M. s. urussovii (Poisson tree processes) or confirming them as distinct taxa (the multispecies coalescent model for species validation). Host plant preferences also partially differentiate the subspecies, as M. s. urussovii has a broader diet than the generally monophagous, spruce-dependent M. s. sartor. Moreover, each subspecies is infected by different strains of the intracellular bacterium Wolbachia, which could be one of the factors causing their genetic isolation, regardless of geographic isolation. Aside from broadening the basic knowledge on the taxonomy and genetics of Monochamus sartor, this study shows that any research on these sawyers needs to consider their separate phylogenetic lineages, as do any plans for population management or conservation.

Every year there are changes in the register of fungicides available for forestry. It is proactive to develop a new strategy to minimise the application of chemical methods and replace them with natural and biological fungal control options. This study compares the influence after one growing season in a bare-root forest nursery of (a) effective microorganisms (EM) consisting of mixed cultures of beneficial and naturally-occurring microorganisms, (b) the organic fertilizer Actifos (Act), and (c) the mineral fertilizer Busz Forte (BF) on the growth and mycorrhizal colonization of two common forest deciduous tree species: Fagus sylvatica and Quercus robur. None of the analysed growth parameters (root collar diameter, length of shoots and roots, dry mass of shoots, and roots) of either tested tree species differed significantly among treatments. For both tree species, seedlings treated with EM exhibited partnerships with a smaller species richness of mycorrhizae than did seedlings in other treatments. Moreover, EM treatment significantly increased the abundance of non-vital root tips for both species. By contrast, BF exerted a negative effect on F. sylvatica non-vital mycorrhiza abundance. Based on morphological and molecular identification, a total of 11 ectomycorrhizal (ECM) fungal taxa were detected in this study; three species (Peziza ostracoderma, Scleroderma areolatum and Cenococcum-like) were shared between both plant species. Across treatments, the most abundant ECM fungal species on F. sylvatica roots were Pezizaceae sp. (51.1%) and Hebeloma sp. (38.1%), while Peziza ostracoderma (26.8%), Naucoria salicis (24.1%), and Scleroderma areolatum (16.9%) were the most abundant taxa on Q. robur seedling roots. Our data indicate a negative effect of EM on ectomycorrhizal colonisation and on species richness of ECM fungi associated with F. sylvatica and Q. robur seedlings. None of the tested products had a negative effect on seedling growth, but seedlings treated with EM were characterised by a significant higher abundance of non-vital mycorrhizae.

In many spruce stands, trees are frequently attacked by the pathogen Heterobasidion parviporum, albeit without visible symptoms in the crown. In the present work, the results of the presence of stem rot, assessed by PICUS Sonic Tomography, and the fungal biota on trees and stumps in eight plots in the Puszcza Borecka Forest are described. The plots were located in stands on original forest soil (4) and on post-agricultural soil (4), where around a stump with H. parviporum symptoms (signs of internal rot and basidiocarps), 30 trees were selected and examined for internal rot. Wood samples were collected from two selected trees for fungal molecular analysis. A total of 79 fungal taxa were found, including 57 taxa in plots on post-agricultural soil and 45 on forest soil. There were 395 fungal records on stumps and 22 records on trees, therein, from the inner parts of felled trunks. Significant differences in the Chao-1 diversity index indicate that the origin of the soil—post-agricultural or forest soil—influenced the alpha diversity of the fungal communities in the forests studied. The values of the Shannon and Simpson indices show that the two communities were similar in terms of species numbers. The presence of basidiomata of H. parviporum and two species of Armillaria (mainly A. cepistipes) in samples on all plots is striking, although Armillaria spp. was detected more frequently. Most of the species identified were typical saprotrophs, although rare species were also found, such as Entoloma byssisedum, Onnia tomentosa, Physisporinus vitreus, Postia ptychogaster, and Ramaria apiculata. The presence of H. parviporum in the inner woody parts was confirmed by PCR analysis, and decay was detected even up to a stem height of 6 m. Armillaria was the dominant genus in the studied stands and plays a significant and underestimated role in heartwood decay of old spruce trees in Puszcza Borecka Forest.