Chenyi Xie

Dr. Chenyi Xie

orcid

Research Focus & Metrics

Academic Career Length

8Years (2019-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 January 2021 in Radiotherapy and Oncology
Verified
Journal Article
Closed access
YHYihuai Hu
Yihuai Hu
CXChenyi Xie
Chenyi Xie
HYHong Yang
Hong Yang
JHJoshua W.K. Ho
Joshua W.K. Ho
JWJing Wen
Jing Wen
JFJianhua Fu
Jianhua Fu

6 April 2020 in European Journal of Nuclear Medicine and Molecular Imaging
Verified
Journal Article
Closed access
PDF file
CXChenyi Xie
Chenyi Xie
RDRichard Du
Richard Du
JHJoshua Wk Ho
Joshua Wk Ho
HPHerbert H Pang
Herbert H Pang
KCKeith W.H. Chiu
Keith W.H. Chiu
VVVarut Vardhanabhuti
Varut Vardhanabhuti

19 May 2021 in Cancers
Verified
Journal Article
Open access
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CXChenyi Xie
Chenyi Xie
CPChun-Lap Pang
Chun-Lap Pang
BCBenjamin Chan
Benjamin Chan
EWEmily Yuen-Yuen Wong
Emily Yuen-Yuen Wong
QDQi Dou
Qi Dou
VVVarut Vardhanabhuti
Varut Vardhanabhuti
Esophageal cancer (EC) is of public health significance as one of the leading causes of cancer death worldwide. Accurate staging, treatment planning and prognostication in EC patients are of vital importance. Recent advances in machine learning (ML) techniques demonstrate their potential to provide novel quantitative imaging markers in medical imaging. Radiomics approaches that could quantify medical images into high-dimensional data have been shown to improve the imaging-based classification system in characterizing the heterogeneity of primary tumors and lymph nodes in EC patients. In this review, we aim to provide a comprehensive summary of the evidence of the most recent developments in ML application in imaging pertinent to EC patient care. According to the published results, ML models evaluating treatment response and lymph node metastasis achieve reliable predictions, ranging from acceptable to outstanding in their validation groups. Patients stratified by ML models in different risk groups have a significant or borderline significant difference in survival outcomes. Prospective large multi-center studies are suggested to improve the generalizability of ML techniques with standardized imaging protocols and harmonization between different centers.

9 April 2019 in Clinical Infectious Diseases
Verified
Journal Article
Open access
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CXChenyi Xie
Chenyi Xie
ELEric Lau
Eric Lau
TYTomoyo Yoshida
Tomoyo Yoshida
HYHan Yu
Han Yu
XWXin Wang
Xin Wang
HYHui-Ling Yen
Hui-Ling Yen
Respiratory virus–laden particles are commonly detected in the exhaled breath of symptomatic patients or in air sampled from healthcare settings. However, the temporal relationship of detecting virus-laden particles at nonhealthcare locations vs surveillance data obtained by conventional means has not been fully assessed. From October 2016 to June 2018, air was sampled weekly from a university campus in Hong Kong. Viral genomes were detected and quantified by real-time reverse-transcription polymerase chain reaction. Logistic regression models were fitted to examine the adjusted odds ratios (aORs) of ecological and environmental factors associated with the detection of virus-laden airborne particles. Influenza A (16.9% [117/694]) and influenza B (4.5% [31/694]) viruses were detected at higher frequencies in air than rhinovirus (2.2% [6/270]), respiratory syncytial virus (0.4% [1/270]), or human coronaviruses (0% [0/270]). Multivariate analyses showed that increased crowdedness (aOR, 2.3 [95% confidence interval {CI}, 1.5–3.8]; P < .001) and higher indoor temperature (aOR, 1.2 [95% CI, 1.1–1.3]; P < .001) were associated with detection of influenza airborne particles, but absolute humidity was not (aOR, 0.9 [95% CI, .7–1.1]; P = .213). Higher copies of influenza viral genome were detected from airborne particles >4 μm in spring and <1 μm in autumn. Influenza A(H3N2) and influenza B viruses that caused epidemics during the study period were detected in air prior to observing increased influenza activities in the community. Air sampling as a surveillance tool for monitoring influenza activity at public locations may provide early detection signals on influenza viruses that circulate in the community.

1 January 2020 in European Journal of Radiology Open
Verified
Journal Article
Open access
CXChenyi Xie
Chenyi Xie
MNMing Yen Ng
Ming Yen Ng
JDJie Ding
Jie Ding
SLSiu Ting Leung
Siu Ting Leung
CLChristine Shing Yen Lo
Christine Shing Yen Lo
VVVarut Vardhanabhuti
Varut Vardhanabhuti
The coronavirus disease 2019 (COVID-19) has evolved into a worldwide pandemic. CT although sensitive in detecting changes suffers from poor specificity in discrimination from other causes of ground glass opacities (GGOs). We aimed to develop and validate a CT-based radiomics model to differentiate COVID-19 from other causes of pulmonary GGOs. We retrospectively included COVID-19 patients between 24/01/2020 and 31/03/2020 as case group and patients with pulmonary GGOs between 04/02/2012 and 31/03/2020 as a control group. Radiomics features were extracted from contoured GGOs by PyRadiomics. The least absolute shrinkage and selection operator method was used to establish the radiomics model. We assessed the performance using the area under the curve of the receiver operating characteristic curve (AUC). A total of 301 patients (age mean ± SD: 64 ± 15 years; male: 52.8 %) from three hospitals were enrolled, including 33 COVID-19 patients in the case group and 268 patients with malignancies or pneumonia in the control group. Thirteen radiomics features out of 474 were selected to build the model. This model achieved an AUC of 0.905, accuracy of 89.5 %, sensitivity of 83.3 %, specificity of 90.0 % in the testing set. We developed a noninvasive radiomics model based on CT imaging for the diagnosis of COVID-19 based on GGO lesions, which could be a promising supplementary tool for improving specificity for COVID-19 in a population confounded by ground glass opacity changes from other etiologies.

29 April 2021 in Cancers
Verified
Journal Article
Open access
PDF file
CXChenyi Xie
Chenyi Xie
YHYi-Huai Hu
Yi-Huai Hu
JHJoshua Wing-Kei Ho
Joshua Wing-Kei Ho
LHLu-Jun Han
Lu-Jun Han
HYHong Yang
Hong Yang
VVVarut Vardhanabhuti
Varut Vardhanabhuti
Purpose: To evaluate the prognostic value of baseline and restaging CT-based radiomics with features associated with gene expression in esophageal squamous cell carcinoma (ESCC) patients receiving neoadjuvant chemoradiation (nCRT) plus surgery. Methods: We enrolled 106 ESCC patients receiving nCRT from two institutions. Gene expression profiles of 28 patients in the training set were used to detect differentially expressed (DE) genes between patients with and without relapse. Radiomic features that were correlated to DE genes were selected, followed by additional machine learning selection. A radiomic nomogram for disease-free survival (DFS) prediction incorporating the radiomic signature and prognostic clinical characteristics was established for DFS estimation and validated. Results: The radiomic signature with DE genes feature selection achieved better performance for DFS prediction than without. The nomogram incorporating the radiomic signature and lymph nodal status significantly stratified patients into high and low-risk groups for DFS (p < 0.001). The areas under the curve (AUCs) for predicting 5-year DFS were 0.912 in the training set, 0.852 in the internal test set, 0.769 in the external test set. Conclusions: Genomics association was useful for radiomic feature selection. The established radiomic signature was prognostic for DFS. The radiomic nomogram could provide a valuable prediction for individualized long-term survival.