Research in global change ecology relies heavily on global climatic grids derived from estimates of air temperature in open areas at around 2 m above the ground. These climatic grids do not reflect conditions below vegetation canopies and near the ground surface, where critical ecosystem functions occur and most terrestrial species reside. Here, we provide global maps of soil temperature and bioclimatic variables at a 1‐km2resolution for 0–5 and 5–15 cm soil depth. These maps were created by calculating the difference (i.e. offset) between in situ soil temperature measurements, based on time series from over 1200 1‐km2pixels (summarized from 8519 unique temperature sensors) across all the world's major terrestrial biomes, and coarse‐grained air temperature estimates from ERA5‐Land (an atmospheric reanalysis by the European Centre for Medium‐Range Weather Forecasts). We show that mean annual soil temperature differs markedly from the corresponding gridded air temperature, by up to 10°C (mean = 3.0 ± 2.1°C), with substantial variation across biomes and seasons. Over the year, soils in cold and/or dry biomes are substantially warmer (+3.6 ± 2.3°C) than gridded air temperature, whereas soils in warm and humid environments are on average slightly cooler (−0.7 ± 2.3°C). The observed substantial and biome‐specific offsets emphasize that the projected impacts of climate and climate change on near‐surface biodiversity and ecosystem functioning are inaccurately assessed when air rather than soil temperature is used, especially in cold environments. The global soil‐related bioclimatic variables provided here are an important step forward for any application in ecology and related disciplines. Nevertheless, we highlight the need to fill remaining geographic gaps by collecting more in situ measurements of microclimate conditions to further enhance the spatiotemporal resolution of global soil temperature products for ecological applications.
Species distribution models (SDMs) have proven valuable in filling gaps in our knowledge of species occurrences. However, despite their broad applicability, SDMs exhibit critical shortcomings due to limitations in species occurrence data. These limitations include, in particular, issues related to sample size, positional uncertainty, and sampling bias. In addition, it is widely recognised that the quality of SDMs as well as the approaches used to mitigate the impact of the aforementioned data limitations depend on species ecology. While numerous studies have evaluated the effects of these data limitations on SDM performance, a synthesis of their results is lacking. However, without a comprehensive understanding of their individual and combined effects, our ability to predict the influence of these issues on the quality of modelled species–environment associations remains largely uncertain, limiting the value of model outputs. In this paper, we review studies that have evaluated the effects of sample size, positional uncertainty, sampling bias, and species ecology on SDMs outputs. We build upon their findings to provide recommendations for the critical assessment of species data intended for use in SDMs.
27 February 2021 in Methods in Ecology and Evolution
Ecosystem heterogeneity has been widely recognized as a key ecological indicator of several ecological functions, diversity patterns and change, metapopulation dynamics, population connectivity or gene flow. In this paper, we present a new R package— rasterdiv —to calculate heterogeneity indices based on remotely sensed data. We also provide an ecological application at the landscape scale and demonstrate its power in revealing potentially hidden heterogeneity patterns. The rasterdiv package allows calculating multiple indices, robustly rooted in Information Theory, and based on reproducible open‐source algorithms.
How biodiversity underpins ecosystem resistance (i.e. ability to withstand environmental perturbations) and recovery (i.e. ability to return to a pre‐perturbation state), and thus, stability under extreme climatic events is a timely question in ecology. To date, most studies have focussed on the role of taxonomic diversity, neglecting how community functional composition and diversity beget stability under exceptional climatic conditions. In addition, land use potentially modulates how biodiversity and ecosystem functions respond to extreme climatic conditions. Using an 11‐year time‐series of plant biomass from 150 permanent grassland plots spanning a gradient of land‐use intensity, we examined how taxonomic and functional components of biodiversity affected resistance and recovery of biomass under extreme drought. The association between biodiversity, land use and biomass varied across years, especially in the driest years. Species‐rich or functionally diverse communities (associated with low land‐use intensity) buffered extreme droughts better, while species‐poor communities or those dominated by fast‐growing species (associated with high land‐use intensity) had higher recovery capabilities after a moderate‐to‐extreme drought. Synthesis. Our results show that plant community functional and taxonomic components determine grasslands resistance and recovery under moderate‐to‐extreme drought. In turn, this points to the importance of designing landscapes with both extensively and intensively managed grasslands. Functionally or taxonomically rich communities (favoured under low land‐use intensity) would preserve biomass under extreme droughts, whereas species‐poor or fast‐growing communities (favoured by high land‐use intensity) would restore biomass after extreme droughts.
1 February 2019 in Science of The Total Environment
Aim: Assessing how different sampling strategies affect the accuracy and precision of species response curves estimated by parametric species distribution models.Major Taxa Studied: Virtual plant species.Location: Abruzzo (Italy).Time Period: Timeless (simulated data).Methods: We simulated the occurrence of two virtual species with different ecology (generalist vs specialist) and distribution extent. We sampled their occurrence following different sampling strategies: random, stratified, systematic, topographic, uniform within the environmental space (hereafter, uniform) and close to roads. For each sampling design and species, we ran 500 simulations at increasing sampling efforts (total: 42,000 replicates). For each replicate, we fitted a binomial generalised linear model, extracted model coefficients for precipitation and temperature, and compared them with true coefficients from the known species' equation. We evaluated the quality of the estimated response curves by computing bias, variance and root mean squared error (RMSE). Additionally, we (i) assessed the impact of missing covariates on the performance of the sampling approaches and (ii) evaluated the effect of incompletely sampling the environmental space on the uniform approach.Results: For the generalist species, we found the lowest RMSE when uniformly sampling the environmental space, while sampling occurrence data close to roads provided the worst performance. For the specialist species, all sampling designs showed comparable outcomes. Excluding important predictors similarly affected all sampling strategies. Sampling limited portions of the environmental space reduced the performance of the uniform approach, regardless of the portion surveyed.Main Conclusions: Our results suggest that a proper estimate of the species response curve can be obtained when the choice of the sampling strategy is guided by the species' ecology. Overall, uniformly sampling the environmental space seems more efficient for species with wide environmental tolerances. The advantage of seeking the most appropriate sampling strategy vanishes when modelling species with narrow realised niches.