Ecosystem restoration has been widely concerned with the damage and degradation of ecosystems worldwide. Scientific and reasonable formulations of ecological restoration zoning is the basis for the formulation of an ecological restoration plan. In this study, a restoration zoning index system was proposed to comprehensively consider the ecological problems of ecosystems. The linear weighted function method was used to construct the ecological restoration index (ERI) as an important index of zoning. The research showed that: (1) the ecological restoration zones of the Qilian Mountains can be divided into eight basins, namely the headwaters of the Datong River Basin, the Danghe-Dahaerteng River Basin, the northern confluence area of the Qinghai Lake, the upper Shule River to middle Heihe River, the Oasis Agricultural Area in the northern foothills of the Qilian Mountain, the Huangshui Basin Valley, Aksay (corridor region of the western Hexi Basin), and the northeastern Tsaidam Basin; (2) the restoration index of the eight ecological restoration zones of the Qilian Mountains was between 0.34–0.8, with an average of 0.61 (the smaller the index, the more prominent the comprehensive ecological problem representing the regional mountains, rivers, forests, cultivated lands, lakes, and grasslands, and thus the greater the need to implement comprehensive ecological protection and restoration projects); and (3) the ecological problems of different ecological zones are frequently numerous, and often show the phenomenon of multiple overlapping ecological problems in the same zone.

The evaluation of ecological restoration projects can provide support for further strengthening the efforts of ecological restoration work and implementing the strategic objectives of the ecological region. Considering the current problem of the single evaluation index, this study evaluated the implementation effect of ecological projects from different temporal and spatial dimensions. Based on the MODIS vegetation index time series data, this study first computed the Sustainable Development Goal (SDG) indicator 15.3.1 of Great Khingan Mountain (GKM) to evaluate the impact of ecological engineering on land use change and land productivity. As a common indicator, the Normalized Difference Vegetation Index (NDVI) values showed a trend of a decrease and then gradual increase after the start of the Natural Forest Protection Project (NFPP) II, which was related to the land use changes from the forest to the grassland during the implementation of the NFPP. However, land productivity maintained a steady trend because of the transition between the forest and grassland. Meanwhile, to detect changes in vegetation at a smaller scale, the LandTrendr algorithm was used to identify the magnitude of forest disturbance, the years when it occurred, and the year of restoration. After implementing the ecological project, the forests in the GKM region were only partially disturbed, and most of the forests in most areas maintained a stable trend. Our study highlighted the varying effectiveness of different indexes for NFPP and evaluated the ecological impact of ecological projects from multiple perspectives.