Ponnadurai Ramasami

Dr. Ponnadurai Ramasami


Research Focus & Metrics

Academic Career Length

22Years (2005-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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12 September 2012 in Journal of Molecular Modeling
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Journal Article
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ABAshwini Bundhun
Ashwini Bundhun
PRPonnadurai Ramasami
Ponnadurai Ramasami
JMJane S. Murray
Jane S. Murray
PPPeter Politzer
Peter Politzer

6 February 2019 in Royal Society Open Science
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Journal Article
Open access
HBHanusha Bhakhoa
Hanusha Bhakhoa
LRLydia Rhyman
Lydia Rhyman
PRPonnadurai Ramasami
Ponnadurai Ramasami
Novichoks are the suspected nerve agents in the March 2018 Skripal poisoning. In this context, the novichok agent A234 (chemical structure proposed by Mirzayanov) was studied using computational methods to shed light on its molecular, electronic, spectroscopic, thermodynamic and toxicity parameters as well as on potential thermal and hydrolysis degradation pathways. The poisoning action and antidote of A234 were also investigated. Some of these parameters were compared to three common G- and V-series nerve agents, namely GB, VR and VX. The research findings should be useful towards the detection, development of antidotes and destruction of A234.

9 June 2021 in Natural Product Research
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Journal Article
Closed access
MAMisbaudeen Abdul-Hammed
Misbaudeen Abdul-Hammed
IAIbrahim Olaide Adedotun
Ibrahim Olaide Adedotun
MOMonsurat Olajide
Monsurat Olajide
CIChristianah Otoame Irabor
Christianah Otoame Irabor
TATolulope Irapada Afolabi
Tolulope Irapada Afolabi
PRPonnadurai Ramasami
Ponnadurai Ramasami
The current research used a virtual screening method to study 57 isolated phytochemicals (alkaloids, phytosterols, and flavonoids) against the SARS-CoV-2 main protease (Mpro). The absorption, distribution, metabolism, excretion, and toxicity (ADMET) of the selected compounds were analysed using admetSAR tool while SwissADME and Molinspiration chemoinformatics tools were used to examine the oral bioavailability and drug-likeness properties. Parameters such as physicochemical properties, activity spectra for substances (PASS) prediction, bioactivity, binding mode, and molecular interactions were also analysed. Our results favoured Lupeol (–8.6 kcal/mol), Lupenone (–7.7 kcal/mol), Hesperetin (–7.4 kcal/mol), Apigenin (–7.3 kcal/mol) and Castasterone (–7.3 kcal/mol) as probable inhibitors of SARS-CoV-2. This is because of their good binding affinities, bioactivities, drug-likeness, ADMET properties, PASS properties, oral bioavailability, binding mode and their interactions with the active site of the target receptor compared to Remdesivir and Azithromycin. Therefore, these compounds could be explored towards the development of new therapeutic agents against SARS-CoV-2. Graphical Abstract

8 December 2020 in SN Applied Sciences
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AKAnokhaa Kheddo
Anokhaa Kheddo
LRLydia Rhyman
Lydia Rhyman
MEMohamed I. Elzagheid
Mohamed I. Elzagheid
PJPratima Jeetah
Pratima Jeetah
PRPonnadurai Ramasami
Ponnadurai Ramasami
The purpose of this study was to remove dyes from synthetic dyed wastewater using activated carbon derived from rice husk. The initial dye concentration was 45 mg/L. The batch adsorption worked best in an acidic medium of pH 2, adsorbent dosage of 13 g/L and agitation speed of 100 rpm with maximum dye removal of 80% after 10 min. The maximum adsorption capacity of the absorbent was found to be 2.0 mg/g with a final dye concentration of 10.8 mg/L. The adsorption was found to be a non-spontaneous, endothermic chemisorption process with less disorder which best fitted the Temkin model and followed pseudo-second order. For column adsorption, the highest qo corresponds to 12.8 mg/g and the maximum dye removal was above 99.5%. Some of the experimental deductions were confirmed by gas-phase computations [B3LYP/6-31G(d)].

27 July 2020 in RSC Advances
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YIYadhav A. Imrit
Yadhav A. Imrit
HBHanusha Bhakhoa
Hanusha Bhakhoa
TSTetiana Sergeieva
Tetiana Sergeieva
SDSergi Danés
Sergi Danés
NSNandini Savoo
Nandini Savoo
PRPonnadurai Ramasami
Ponnadurai Ramasami
A theoretical study of the hydrolysis mechanism of A-234 [EtO–P(O)(F)–NC(Me)–N(Et)2]; the suspected novichok agent in the Skripal attack.

1 January 2019 in Main Group Metal Chemistry
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ÖAÖzgür Alver
Özgür Alver
CPCemal Parlak
Cemal Parlak
Yunusa UmarYunusa Umar
Yunusa Umar
PRPonnadurai Ramasami
Ponnadurai Ramasami
Fullerenes have received attentions due to their versatile properties. Molecular structures and electronic properties namely binding energy, band gap, electrophilicity index and molecular topological analysis were studied for undoped and silicon doped C 20 fullerenes and favipiravir in order to search for possible application of the systems as drug delivery vehicles. Density functional theory (DFT) and quantum theory of atoms in molecules (QTAIM) were used for the research. Molecular structures having the interaction edges of SiC 19 … OH in water and SiC 19 …C=O in gas phase were found as those most stable with binding energies of -57.28 kcal/mol and -43.46 kcal/mol correspondingly. The results and parameters found in this research may provide additional insights into drug delivery systems.