Natural toxins are a source of new chemical classes of pesticides, as well as environmentally and toxicologically safer molecules than many of the currently used pesticides. Furthermore, they often have molecular target sites that are not exploited by currently marketed pesticides. There are highly successful products based on natural compounds in the major pesticide classes. These include the herbicide glufosinate (synthetic phosphinothricin), the spinosad insecticides, and the strobilurin fungicides. These and other examples of currently marketed natural product-based pesticides, as well as natural toxins that show promise as pesticides from our own research are discussed.

The bacteria Edwardsiella ictaluri and Flavobacterium columnare cause enteric septicemia and columnaris disease, respectively, in channel catfish (Ictalurus punctatus). Natural therapeutants may provide an alternative to current management approaches used by producers. In this study, a rapid bioassay identified plant compounds as potential therapeutants. Chelerythrine chloride and ellagic acid were the most toxic toward E. ictaluri, with 24-h IC50 of 7.3 mg/L and 15.1 mg/L, respectively, and MIC of 2.1 mg/L and 6.5 mg/L, respectively. Chelerythrine chloride, ellagic acid, β-glycyrrhetinic acid, sorgoleone, and wogonin were the most toxic towards two genomovars of F. columnare, and wogonin had the strongest antibacterial activity (MIC = 0.3 mg/L).

Isolates of Nocardia cummidelens, Nocard ia fluminea, Streptomyces albidoflavus, and Streptomyces luridiscabiei attributed as the cause of “earthy-musty” off-flavor in rainbow trout (Oncorhynchus mykiss) raised in recirculating aquaculture systems (RAS) were evaluated for the effect of temperature (10–30 °C) on biomass, geosmin, and 2-methylisoborneol (MIB) production and cellular activity. Cultures of these isolates were monitored over 7 days by measuring culture dry weight, geosmin, and MIB production using solid-phase microextraction-gas chromatography-mass spectrometry (SPME–GC–MS), and ATP production via a luminometer. Compared to the other isolates, S. luridiscabiei had significantly (P < 0.05) higher biomass (8.17 ± 0.35 mg/mL) at 15 °C (water temperature in the RAS) after 7 days incubation. In addition, S. luridiscabiei produced significantly (P < 0.05) higher geosmin (69,976 ± 15,733 ng/L) at 15 °C. At 25 °C and 30 °C, S. albidoflavus produced significantly (P < 0.05) higher geosmin (182,074 ± 60,272 ng/L and 399,991 ± 102,262 ng/L, respectively). All isolates produced MIB at 15 °C, but S. luridiscabiei produced significantly (P < 0.05) higher MIB (97,143 ± 28,972 ng/L) and ATP after 7 days. Therefore, S. luridiscabiei appears to be a likely contributor of geosmin and MIB in the RAS.

There has been a growing interest and use of variations of partitioned aquaculture systems (PAS) in recent years by the southeastern U.S. catfish farming industry. Split-pond systems, one type of PAS, are designed to better manage fish waste byproducts (e.g., ammonia) and dissolved oxygen levels than the conventional earthen ponds that have been used by farmers for many decades. Recent studies have focused on design, water flow rates, and other management areas of catfish split-ponds, but so far there has not been a focused examination of phytoplankton community composition and biomass in these split-ponds. In the current study, pond water samples were collected from split-ponds at a research facility in western Mississippi and at a commercial fish farm in western Alabama approximately every 3 weeks during the fish grow-out period (May to November). Water samples were analyzed for chlorophyll a concentration (phytoplankton biomass) of several major phytoplankton divisions and for types of phytoplankton and their abundance. Overall, chlorophyll a concentrations in the split-ponds were maintained within the typical range (0–800 µg/L) found in non-PAS (conventional) catfish ponds. The phytoplankton communities in split-ponds were dominated by cyanobacteria or blue-green algae (Cyanophyta) and by the same common species of cyanobacteria (e.g., Planktothrix agardhii, P. perornata, Microcystis aeruginosa, Raphidiopsis brookii) reported in previous studies for conventional catfish ponds. In addition, many types of phytoplankton in the other major divisions—Chlorophyta (green algae), Bacillariophyta (diatoms), Chrysophyta (golden brown algae), Cryptophyta (cryptomonads), Euglenophyta (euglenophytes), and Pyrrhophyta (dinoflagellates)—present in the split-ponds were the same as those reported previously in conventional catfish ponds. Therefore, issues related to management practices for pond water quality (e.g., dissolved oxygen) and undesirable cyanobacteria are expected to be similar to those used for conventional ponds.