James Alexander Green

Dr. James Alexander Green

Consiglio Nazionale Delle Ricerche
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Research Focus & Metrics

Academic Career Length

16Years (2011-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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23 February 2021 in Physical Chemistry Chemical Physics
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Fabrizzio SantoroFabrizzio Santoro
Fabrizzio Santoro
James Alexander GreenJames Alexander Green
James Alexander Green
LMLara Martinez-Fernandez
Lara Martinez-Fernandez
JCJavier Cerezo
Javier Cerezo
RIRoberto Improta
Roberto Improta
We concisely review the most used methodological approaches to model nonadiabatic dynamics in isotropic solutions and their applications.

20 March 2021 in Molecules
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Journal Article
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James Alexander GreenJames Alexander Green
James Alexander Green
MJMartha Yaghoubi Jouybari
Martha Yaghoubi Jouybari
DADaniel Aranda
Daniel Aranda
RIRoberto Improta
Roberto Improta
Fabrizzio SantoroFabrizzio Santoro
Fabrizzio Santoro
We have recently proposed a protocol for Quantum Dynamics (QD) calculations, which is based on a parameterisation of Linear Vibronic Coupling (LVC) Hamiltonians with Time Dependent (TD) Density Functional Theory (TD-DFT), and exploits the latest developments in multiconfigurational TD-Hartree methods for an effective wave packet propagation. In this contribution we explore the potentialities of this approach to compute nonadiabatic vibronic spectra and ultrafast dynamics, by applying it to the five nucleobases present in DNA and RNA. For all of them we computed the absorption spectra and the dynamics of ultrafast internal conversion (100 fs timescale), fully coupling the first 2–3 bright states and all the close by dark states, for a total of 6–9 states, and including all the normal coordinates. We adopted two different functionals, CAM-B3LYP and PBE0, and tested the effect of the basis set. Computed spectra are in good agreement with the available experimental data, remarkably improving over pure electronic computations, but also with respect to vibronic spectra obtained neglecting inter-state couplings. Our QD simulations indicate an effective population transfer from the lowest energy bright excited states to the close-lying dark excited states for uracil, thymine and adenine. Dynamics from higher-energy states show an ultrafast depopulation toward the more stable ones. The proposed protocol is sufficiently general and automatic to promise to become useful for widespread applications.

4 April 2022 in Journal of Chemical Theory and Computation
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ASAlekos Segalina
Alekos Segalina
DADaniel Aranda
Daniel Aranda
James Alexander GreenJames Alexander Green
James Alexander Green
VCVito Cristino
Vito Cristino
SCStefano Caramori
Stefano Caramori
Fabrizzio SantoroFabrizzio Santoro
Fabrizzio Santoro
In this contribution we present a mixed quantum-classical dynamical approach for the computation of vibronic absorption spectra of molecular aggregates and their nonadiabatic dynamics, taking into account the coupling between local excitations (LE) and charge-transfer (CT) states. The approach is based on an adiabatic (Ad) separation between the soft degrees of freedom (DoFs) of the system and the stiff vibrations, which are described by the quantum dynamics (QD) of wave packets (WPs) moving on the coupled potential energy surfaces (PESs) of the LE and CT states. These PESs are described with a linear vibronic coupling (LVC) Hamiltonian, parameterized by an overlap-based diabatization on the grounds of time-dependent density functional theory computations. The WPs time evolution is computed with the multiconfiguration time-dependent Hartree method, using effective modes defined through a hierarchical representation of the LVC Hamiltonian. The soft DoFs are sampled with classical molecular dynamics (MD), and the coupling between the slow and fast DoFs is included by recomputing the key parameters of the LVC Hamiltonians, specifically for each MD configuration. This method, named Ad-MD|gLVC, is applied to a perylene diimide (PDI) dimer in acetonitrile and water solutions, and it is shown to accurately reproduce the change in the vibronic features of the absorption spectrum upon aggregation. Moreover, the microscopic insight offered by the MD trajectories allows for a detailed understanding of the role played by the fluctuation of the aggregate structure on the shape of the vibronic spectrum and on the population of LE and CT states. The nonadiabatic QD predicts an extremely fast (∼50 fs) energy transfer between the two LEs. CT states have only a moderate effect on the absorption spectrum, despite the fact that after photoexcitation they are shown to acquire a fast and non-negligible population, highlighting their relevance in dictating the charge separation and transport in PDI-based optical devices.

30 December 2020 in Journal of Chemical Theory and Computation
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Closed access
James Alexander GreenJames Alexander Green
James Alexander Green
HAHaritha Asha
Haritha Asha
Fabrizzio SantoroFabrizzio Santoro
Fabrizzio Santoro
RIRoberto Improta
Roberto Improta

16 July 2021 in Journal of Chemical Theory and Computation
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Journal Article
Closed access
James Alexander GreenJames Alexander Green
James Alexander Green
MJMartha Yaghoubi Jouybari
Martha Yaghoubi Jouybari
HAHaritha Asha
Haritha Asha
Fabrizzio SantoroFabrizzio Santoro
Fabrizzio Santoro
RIRoberto Improta
Roberto Improta

14 November 2014 in Journal of Chemical Theory and Computation
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Journal Article
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ABAlex Borgoo
Alex Borgoo
James Alexander GreenJames Alexander Green
James Alexander Green
DTDavid J. Tozer
David J. Tozer