Daniel Aranda

Dr. Daniel Aranda

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Research Focus & Metrics

Academic Career Length

11Years (2016-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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30 December 2020 in Journal of the American Chemical Society
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Journal Article
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XXXiao Xiao
Xiao Xiao
SPStephan K. Pedersen
Stephan K. Pedersen
DADaniel Aranda
Daniel Aranda
JYJingjing Yang
Jingjing Yang
RWRen A. Wiscons
Ren A. Wiscons
CNColin Nuckolls
Colin Nuckolls

19 December 2019 in Journal of Chemical Theory and Computation
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Journal Article
Open access
JCJavier Cerezo
Javier Cerezo
DADaniel Aranda
Daniel Aranda
FFFrancisco José Avila Ferrer
Francisco José Avila Ferrer
GPGiacomo Prampolini
Giacomo Prampolini
Fabrizzio SantoroFabrizzio Santoro
Fabrizzio Santoro
We present a general mixed quantum classical method that couples classical Molecular Dynamics (MD) and vibronic models to compute the shape of electronic spectra of flexible molecules in condensed phase without, in principle, any phenomenological broadening. It is based on a partition of the nuclear motions of the solute+solvent system in "soft" and "stiff" vibrational modes, and an adiabatic hypothesis that assumes that stiff modes are much faster than soft ones. In this framework the spectrum is rigorously expressed as a conformational integral of quantum vibronic spectra along the stiff coordinates only. Soft modes enter at classical level through the conformational distribution that is sampled with classical MD runs. At each configuration, reduced-dimensionality quadratic Hamiltonians are built in the space of the stiff coordinates only, thanks to a generalization of the Vertical Hessian harmonic model and an iterative application of projectors in internal coordinates to remove soft modes. Quantum vibronic spectra, specific for each sampled configuration of the soft coordinates, are then computed at the desired temperature with efficient time-dependent techniques, and the global spectrum simply arises from their average. For consistency of the whole procedure, classical MD runs are performed with quantum-mechanically derived force fields, parameterized at the same level of theory selected for generating the quadratic Hamiltonians along the stiff coordinates. Application to N-methyl-6-oxyquinolinium betaine in water, dithiophene in ethanol, and a flexible cyanidine in water are presented to show the performance of the method.

4 April 2022 in Journal of Chemical Theory and Computation
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ASAlekos Segalina
Alekos Segalina
DADaniel Aranda
Daniel Aranda
James Alexander GreenJames Alexander Green
James Alexander Green
VCVito Cristino
Vito Cristino
SCStefano Caramori
Stefano Caramori
Fabrizzio SantoroFabrizzio Santoro
Fabrizzio Santoro
In this contribution we present a mixed quantum-classical dynamical approach for the computation of vibronic absorption spectra of molecular aggregates and their nonadiabatic dynamics, taking into account the coupling between local excitations (LE) and charge-transfer (CT) states. The approach is based on an adiabatic (Ad) separation between the soft degrees of freedom (DoFs) of the system and the stiff vibrations, which are described by the quantum dynamics (QD) of wave packets (WPs) moving on the coupled potential energy surfaces (PESs) of the LE and CT states. These PESs are described with a linear vibronic coupling (LVC) Hamiltonian, parameterized by an overlap-based diabatization on the grounds of time-dependent density functional theory computations. The WPs time evolution is computed with the multiconfiguration time-dependent Hartree method, using effective modes defined through a hierarchical representation of the LVC Hamiltonian. The soft DoFs are sampled with classical molecular dynamics (MD), and the coupling between the slow and fast DoFs is included by recomputing the key parameters of the LVC Hamiltonians, specifically for each MD configuration. This method, named Ad-MD|gLVC, is applied to a perylene diimide (PDI) dimer in acetonitrile and water solutions, and it is shown to accurately reproduce the change in the vibronic features of the absorption spectrum upon aggregation. Moreover, the microscopic insight offered by the MD trajectories allows for a detailed understanding of the role played by the fluctuation of the aggregate structure on the shape of the vibronic spectrum and on the population of LE and CT states. The nonadiabatic QD predicts an extremely fast (∼50 fs) energy transfer between the two LEs. CT states have only a moderate effect on the absorption spectrum, despite the fact that after photoexcitation they are shown to acquire a fast and non-negligible population, highlighting their relevance in dictating the charge separation and transport in PDI-based optical devices.

20 March 2021 in Molecules
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James Alexander GreenJames Alexander Green
James Alexander Green
MJMartha Yaghoubi Jouybari
Martha Yaghoubi Jouybari
DADaniel Aranda
Daniel Aranda
RIRoberto Improta
Roberto Improta
Fabrizzio SantoroFabrizzio Santoro
Fabrizzio Santoro
We have recently proposed a protocol for Quantum Dynamics (QD) calculations, which is based on a parameterisation of Linear Vibronic Coupling (LVC) Hamiltonians with Time Dependent (TD) Density Functional Theory (TD-DFT), and exploits the latest developments in multiconfigurational TD-Hartree methods for an effective wave packet propagation. In this contribution we explore the potentialities of this approach to compute nonadiabatic vibronic spectra and ultrafast dynamics, by applying it to the five nucleobases present in DNA and RNA. For all of them we computed the absorption spectra and the dynamics of ultrafast internal conversion (100 fs timescale), fully coupling the first 2–3 bright states and all the close by dark states, for a total of 6–9 states, and including all the normal coordinates. We adopted two different functionals, CAM-B3LYP and PBE0, and tested the effect of the basis set. Computed spectra are in good agreement with the available experimental data, remarkably improving over pure electronic computations, but also with respect to vibronic spectra obtained neglecting inter-state couplings. Our QD simulations indicate an effective population transfer from the lowest energy bright excited states to the close-lying dark excited states for uracil, thymine and adenine. Dynamics from higher-energy states show an ultrafast depopulation toward the more stable ones. The proposed protocol is sufficiently general and automatic to promise to become useful for widespread applications.


26 February 2018 in Physical Chemistry Chemical Physics
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DADaniel Aranda
Daniel Aranda
FAFrancisco J. Avila
Francisco J. Avila
ILIsabel López-Tocón
Isabel López-Tocón
JAJuan F. Arenas
Juan F. Arenas
JMJuan Carlos Otero Fdez. de Molina
Juan Carlos Otero Fdez. de Molina
JSJuan Soto
Juan Soto
Photoexcitation of 4-methoxyphenyl azide at 266 nm yields triplet nitrene after decaying through an intersystem crossing (ISC1, 21A′/23A′′) in a first step followed by internal conversion (CI2, 23A′′/13A′′).