Methane (CH₄) strongly contributes to observed global warming. As natural CH₄ emissions mainly originate from wet ecosystems, it is important to unravel how climate change may affect these emissions. This is especially true for ebullition (bubble flux from sediments), a pathway that has long been underestimated but generally dominates emissions. Here we show a remarkably strong relationship between CH₄ ebullition and temperature across a wide range of freshwater ecosystems on different continents using multi-seasonal CH₄ ebullition data from the literature. As these temperature–ebullition relationships may have been affected by seasonal variation in organic matter availability, we also conducted a controlled year-round mesocosm experiment. Here 4 °C warming led to 51% higher total annual CH₄ ebullition, while diffusion was not affected. Our combined findings suggest that global warming will strongly enhance freshwater CH₄ emissions through a disproportional increase in ebullition (6–20% per 1 °C increase), contributing to global warming.

Summary: Chytridiomycota, often referred to as chytrids, can be virulent parasites with the potential to inflict mass mortalities on hosts, causing e.g. changes in phytoplankton size distributions and succession, and the delay or suppression of bloom events. Molecular environmental surveys have revealed an unexpectedly large diversity of chytrids across a wide range of aquatic ecosystems worldwide. As a result, scientific interest towards fungal parasites of phytoplankton has been gaining momentum in the past few years. Yet, we still know little about the ecology of chytrids, their life cycles, phylogeny, host specificity and range. Information on the contribution of chytrids to trophic interactions, as well as co‐evolutionary feedbacks of fungal parasitism on host populations is also limited. This paper synthesizes ideas stressing the multifaceted biological relevance of phytoplankton chytridiomycosis, resulting from discussions among an international team of chytrid researchers. It presents our view on the most pressing research needs for promoting the integration of chytrid fungi into aquatic ecology.

Global warming has been shown to affect ecosystems worldwide. Warming may, for instance, disrupt plant herbivore synchrony and bird phenology in terrestrial systems, reduce primary production in oceans, and promote toxic cyanobacterial blooms in freshwater lakes. Responses of communities will not only depend on direct species‐specific temperature effects, but also on indirect effects related to bottom‐up and top‐down processes. Here, we investigated the impact of warming on freshwater phytoplankton community dynamics, and assessed the relative contribution of nutrient availability, fungal parasitism, and grazing therein. For this purpose, we performed an indoor mesocosm experiment following seasonal temperature dynamics of temperate lakes and a warmed (+4°C) scenario from early spring to late summer. We assessed phytoplankton biomass, C:N:P stoichiometry and community composition, dissolved nutrient availabilities, fungal parasite (i.e., chytrid) prevalence, and zooplankton abundance. Warming led to an overall reduction in phytoplankton biomass as well as lower C:P and N:P ratios, while phytoplankton community composition remained largely unaltered. Warming resulted in an earlier termination of the diatom spring bloom, and an epidemic of its fungal parasite ended earlier as well. Furthermore, warming advanced zooplankton phenology, leading to an earlier top‐down control on phytoplankton in the period after the spring bloom. Linear model analysis showed that most of the observed variance in phytoplankton biomass was related to seasonal temperature dynamics in combination with zooplankton abundance. Our findings showed that warming advanced grazer phenology and reduced phytoplankton biomass, thereby demonstrating how bottom‐up and top‐down related processes may shape future phytoplankton dynamics.

Chytrid fungal parasites are ubiquitous in aquatic ecosystems and infect a wide array of aquatic organisms, including all phytoplankton groups. In addition to their role as parasites, chytrids serve as food to zooplankton, thereby establishing an alternative trophic link between primary and secondary production in pelagic food webs, the so‐called mycoloop. We hypothesized that, in addition to the mycoloop, chytrid infection facilitates grazing of filamentous phytoplankton by rendering it more edible to zooplankton consumers through infection‐induced fragmentation. We undertook grazing assays to compare the ability of the key zooplankter Daphnia to graze on a filamentous cyanobacterium in the presence or absence of chytrid infection. A near doubling in mean clearance rates was consistently recorded when Daphnia were fed with infected cultures of the cyanobacterium as compared to uninfected ones. Infected filaments were shorter than noninfected ones, indicating that infection‐induced fragmentation undermines resistance of filamentous phytoplankton to grazing. We propose an extended conceptualization of the mycoloop that includes both direct effects (i.e., transfer via grazing of chytrid zoospores) and indirect effects (i.e., trophic upgrading and facilitated grazing on phytoplankton via fragmentation) of chytrid infection on trophic transfer at the base of pelagic food webs.