Despite accumulating evidence of the importance of the jellyfish-associated microbiome to jellyfish, its potential relevance to blue biotechnology has only recently been recognized. In this review, we emphasize the biotechnological potential of host–microorganism systems and focus on gelatinous zooplankton as a host for the microbiome with biotechnological potential. The basic characteristics of jellyfish-associated microbial communities, the mechanisms underlying the jellyfish-microbe relationship, and the role/function of the jellyfish-associated microbiome and its biotechnological potential are reviewed. It appears that the jellyfish-associated microbiome is discrete from the microbial community in the ambient seawater, exhibiting a certain degree of specialization with some preferences for specific jellyfish taxa and for specific jellyfish populations, life stages, and body parts. In addition, different sampling approaches and methodologies to study the phylogenetic diversity of the jellyfish-associated microbiome are described and discussed. Finally, some general conclusions are drawn from the existing literature and future research directions are highlighted on the jellyfish-associated microbiome.

Jellyfish are a prominent component of the plankton community. They frequently form conspicuous blooms which may interfere with different human enterprises. Among the aspects that remain understudied are jellyfish associations with microorganisms having potentially important implications for organic matter cycling. To the best of our knowledge, this study is the first to investigate the bacterial community associated with live moon jellyfish (Aurelia solida, Scyohozoa) in the Adriatic Sea. Using 16S rRNA clone libraries and culture-based methods, we have analyzed the bacterial community composition of different body parts: the exumbrella surface, oral arms, and gastric cavity, and investigated possible differences in medusa-associated bacterial community structure at the time of the jellyfish population peak, and during the senescent phase at the end of bloom. Microbiota associated with moon jellyfish was different from ambient seawater bacterial assemblage and varied between different body parts. Betaproteobacteria (Burkholderia, Cupriavidus and Achromobacter) dominated community in the gastral cavity of medusa, while Alphaproteobacteria (Phaeobacter, Ruegeria) and Gammaproteobacteria (Stenotrophomonas, Alteromonas, Pseudoalteromonas and Vibrio) prevailed on ‘outer’ body parts. Bacterial community structure changed during senescent phase, at the end of the jellyfish bloom, showing an increased abundance of Gammaproteobacteria, exclusively Vibrio. The results of cultured bacterial isolates showed the dominance of Gammaproeteobacteria, especially Vibrio and Pseudoalteromonas in all body parts. Our results suggest that jellyfish associated bacterial community might have an important role for the host, and that anthropogenic pollution in the Gulf of Trieste might affect their community structure.

Currently, around 50% of the world's population lives in towns and cities within 100 km of the coast. Monitoring of viruses that are frequently present in contaminated coastal environments, such as rota virus (RoV) and norovirus (NoV), which are also the major cause of human viral gastroenteritis, is essential to ensure the safe use of these water bodies. Since exposure to as few as 10-100 particles of RoV or NoV may induce gastrointestinal disease, there is a need to develop a rapid and sensitive diagnostic method for their detection in coastal water samples. In this study, we evaluate the application of methacrylate monolithic chromatographic columns, commercially available as convective interaction media (CIM (R)), to concentrate pathogenic enteric viruses from saline water samples prior to virus quantification by one-step reverse transcription quantitative PCR (RT-qPCR). Using RoV and NoV as model enteric viruses, we present our results on the most effective viral concentration conditions from saline water matrices using butyl (C4) hydrophobic interaction monolithic support (CIM (R) C4). C4 monolithic columns exhibit a good capacity to bind both RoV and NoV and both viruses can be eluted in a single step. Our protocol using a 1 ml C4 column enables processing of 400 ml saline water samples in less than 60 min and increases the sensitivity of RoV and NoV detection by approximately 50-fold and 10-fold respectively. The protocol was also scaled up using larger capacity 8 ml C4 columns to process 4000 ml of seawater samples with concentration factors of 300-fold for RoV and 40-fold for NoV, without any significant increase in processing time. Furthermore, C4 monolithic columns were adapted for field use in an on-site application of RoV concentration from seawater samples with performance equivalent to that of the reference laboratory setup. Overall, the results from successful deployment of CIM C4 columns for concentration of rotavirus and norovirus in seawater samples reiterate the utility of monolithic supports as efficient, scalable and modular preparative tools for processing environmental water samples to enhance viral detection using molecular methods. (C) 2016 BioSistemika LLC. Published by Elsevier Ltd.

The surface structures and mucus layers that form an interface between the epithelial layer of organisms and their external environment were studied in the bloom-forming moon jellyfish (Aurelia solida, Scyphozoa) from the northern Adriatic. The surface of the polyps revealed epithelial ciliated cells and numerous nematocysts, both non-discharged and discharged. Cilia were also the most prominent features on the surface of adult medusa, protruding from the epidermal cells and with microvilli surrounding the base. Histochemical methods and various microscopy techniques (light/epifluorescence and electron microscopy) confirmed the presence of abundant mucus around polyps and on the surfaces of adult medusa, and that the mucus contained acidic and neutral mucins. The observed mucus secretions on the exumbrella surface of the medusae were in the form of granules, flocs, and sheets. Scanning electron microscopy and transmission electron microscopy analyses confirmed the presence of various microbes in the mucus samples, but not on the epithelial surfaces of the polyps or the exumbrella of the medusae.

This study is the first to investigate bacterial community associated with live medusa Aurelia sp . in the Gulf of Trieste (northern Adriatic Sea) using both culture independent and culture-based methods. We have analysed bacterial community composition of different body parts of medusa: exumbrella surface, oral arms (‘outer’ body parts) and of gastric cavity (‘inner’ body part) and investigated possible differences in medusa associated bacterial community structure at the time of jellyfish population peak and during senescent phase at the end of bloom, when jellyfish start to decay. Based on 16S rRNA clone libraries and denaturing gradient gel electrophoresis (DGGE) analysis, we demonstrated significant difference between bacterial community associated with Aurelia and the ambient seawater bacterial assemblage. Comparing bacterial community composition between different Aurelia medusa body parts, communities differed significantly, especially the one within the gastral cavity. The pronounced difference is dominance of Betaproteobacteria ( Burkholderia, Cupriavidus and Achromobacter ) in gastral cavity of medusa and Alpha - ( Phaeobacter, Ruegeria ) and Gamma - proteobacteria ( Stenotrophomonas, Alteromonas, Pseudoalteromonas and Vibrio ) on ‘outer’ body parts. This suggests that body-part specific bacterial association might have an important functional roles for the host. The results of bacterial isolates showed the dominance of Gammaproeteobacteria , especially Vibrio and Pseudoalteromonas in all body parts. Finally, comparison of medusa associated bacterial community structure, at the time of jellyfish population peak and during senescent phase at the end of bloom showed increased abundance of Gammaproteobacteria , especially Vibrio . Our results suggest members of Vibrio group are possible commensal opportunistic visitors, later becoming consumer of moribund jellyfish biomass and that the structure of jellyfish bacterial community might be affected by anthropogenic pollution in the marine environment.

Although the marginal seas represent only 7% of the total ocean area, the CO2 fluxes are intensive and important for the carbon budget, exposing to an intense process of anthropogenic ocean acidification (OA). A decline in pH, especially in the estuarine waters, results also from the eutrophication-induced acidification. The Adriatic Sea is currently a CO2 sink with an annual flux of approximately -1.2 to -3 mol C m-2 yr-1 which is twice as low compared to the net sink rates in the NW Mediterranean (-4 to -5 mol C m-2 yr-1). Based on the comparison of two winter cruises carried out in in the 25-year interval between 1983 and 2008, acidification rate of 0.003 pHT units yr−1 was estimated in the northern Adriatic which is similar to the Mediterranean open waters (with recent estimations of −0.0028 ± 0.0003 units pHT yr−1) and the surface coastal waters (-0.003 ± 0.001 and -0.0044 ± 0.00006 pHT units yr−1). The computed Revelle factor for the Adriatic Sea, with the value of about 10, indicates that the buffer capacity is rather high and that the waters should not be particularly exposed to acidification. Total alkalinity (TA) in the Adriatic (2.6-2.7 mM) is in the upper range of TA measured in the Mediterranean Sea because riverine inputs transport carbonates dissolved from the Alpine dolomites and karstic watersheds. The Adriatic Sea is the second sub-basin (319 Gmol yr-1), following the Aegean Sea (which receives the TA contribution from the Black Sea), that contribute to the riverine TA discharges into the Mediterranean Sea. About 60% of the TA inflow into the Adriatic Sea is attributed to the Po river discharge with TA of ~3 mM and TA decreases with increasing salinity. Saturation state indicates that the waters of the Adriatic are supersaturated with respect to calcite (ΩCa) and aragonite (ΩAr) throughout the year. However, saturation states are considerably lower in the bottom water layers, due to the prevalence of benthic remineralization processes in the stratification period. The seasonal changes of the chemical and environmental conditions and relatively small size of the Adriatic Sea area the microbial community composition, function (growth, enzymatic activity) and carbon and nitrogen biogeochemical cycles. Significant effects on calcifying organisms and phytoplankton are expected while the effects of possible OA on microbially-driven processes are not known yet.