Hans Bakker

Dr. Hans Bakker

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Research Focus & Metrics

Academic Career Length

37Years (1990-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 January 2009 in New England Journal of Medicine
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KBKaan Boztug
Kaan Boztug
GAGiridharan Appaswamy
Giridharan Appaswamy
AAAngel Ashikov
Angel Ashikov
ASAlejandro A. Schäffer
Alejandro A. Schäffer
USUlrich Salzer
Ulrich Salzer
CKChristoph Klein
Christoph Klein
The main features of severe congenital neutropenia are the onset of severe bacterial infections early in life, a paucity of mature neutrophils, and an increased risk of leukemia. In many patients, the genetic causes of severe congenital neutropenia are unknown. We performed genomewide genotyping and linkage analysis on two consanguineous pedigrees with a total of five children affected with severe congenital neutropenia. Candidate genes from the linkage interval were sequenced. Functional assays and reconstitution experiments were carried out. All index patients were susceptible to bacterial infections and had very few mature neutrophils in the bone marrow; structural heart defects, urogenital abnormalities, and venous angiectasia on the trunk and extremities were additional features. Linkage analysis of the two index families yielded a combined multipoint lod score of 5.74 on a linkage interval on chromosome 17q21. Sequencing of G6PC3, the candidate gene encoding glucose-6-phosphatase, catalytic subunit 3, revealed a homozygous missense mutation in exon 6 that abolished the enzymatic activity of glucose-6-phosphatase in all affected children in the two families. The patients' neutrophils and fibroblasts had increased susceptibility to apoptosis. The myeloid cells showed evidence of increased endoplasmic reticulum stress and increased activity of glycogen synthase kinase 3β (GSK-3β). We identified seven additional, unrelated patients who had severe congenital neutropenia with syndromic features and distinct biallelic mutations in G6PC3. Defective function of glucose-6-phosphatase, catalytic subunit 3, underlies a severe congenital neutropenia syndrome associated with cardiac and urogenital malformations.

27 February 2001 in Proceedings of the National Academy of Sciences
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HBHans Bakker
Hans Bakker
MBMuriel Bardor
Muriel Bardor
JMJos W. Molthoff
Jos W. Molthoff
VGVéronique Gomord
Véronique Gomord
IEIngrid Elbers
Ingrid Elbers
DBDirk Bosch
Dirk Bosch
Plant-specificN-glycosylation can represent an important limitation for the use of recombinant glycoproteins of mammalian origin produced by transgenic plants. Comparison of plant and mammalianN-glycan biosynthesis indicates that β1,4-galactosyltransferase is the most important enzyme that is missing for conversion of typical plantN-glycans into mammalian-likeN-glycans. Here, the stable expression of human β1,4-galactosyltransferase in tobacco plants is described. Proteins isolated from transgenic tobacco plants expressing the mammalian enzyme bearN-glycans, of which about 15% exhibit terminal β1,4-galactose residues in addition to the specific plantN-glycan epitopes. The results indicate that the human enzyme is fully functional and localizes correctly in the Golgi apparatus. Despite the fact that through the modified glycosylation machinery numerous proteins have acquired unusualN-glycans with terminal β1,4-galactose residues, no obvious changes in the physiology of the transgenic plants are observed, and the feature is inheritable. The crossing of a tobacco plant expressing human β1,4-galactosyltransferase with a plant expressing the heavy and light chains of a mouse antibody results in the expression of a plantibody that exhibits partially galactosylatedN-glycans (30%), which is approximately as abundant as when the same antibody is produced by hybridoma cells. These results are a major step in thein plantaengineering of theN-glycosylation of recombinant antibodies.

1 August 2008 in Eukaryotic Cell
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PSPhilipp S. Schmalhorst
Philipp S. Schmalhorst
Sven KrappmannSven Krappmann
Sven Krappmann
WVWouter Vervecken
Wouter Vervecken
MRManfred Rohde
Manfred Rohde
MMMeike MülLer
Meike MülLer
FRFrancoise Routier
Francoise Routier
The filamentous fungus Aspergillus fumigatus is responsible for a lethal disease called invasive aspergillosis that affects immunocompromised patients. This disease, like other human fungal diseases, is generally treated by compounds targeting the primary fungal cell membrane sterol. Recently, glucan synthesis inhibitors were added to the limited antifungal arsenal and encouraged the search for novel targets in cell wall biosynthesis. Although galactomannan is a major component of the A. fumigatus cell wall and extracellular matrix, the biosynthesis and role of galactomannan are currently unknown. By a targeted gene deletion approach, we demonstrate that UDP-galactopyranose mutase, a key enzyme of galactofuranose metabolism, controls the biosynthesis of galactomannan and galactofuranose containing glycoconjugates. The glfA deletion mutant generated in this study is devoid of galactofuranose and displays attenuated virulence in a low-dose mouse model of invasive aspergillosis that likely reflects the impaired growth of the mutant at mammalian body temperature. Furthermore, the absence of galactofuranose results in a thinner cell wall that correlates with an increased susceptibility to several antifungal agents. The UDP-galactopyranose mutase thus appears to be an appealing adjunct therapeutic target in combination with other drugs against A. fumigatus . Its absence from mammalian cells indeed offers a considerable advantage to achieve therapeutic selectivity.

1 April 2013 in Molecular Cell
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Journal Article
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FBFalk F.R. Buettner
Falk F.R. Buettner
AAAngel Ashikov
Angel Ashikov
BTBirgit Tiemann
Birgit Tiemann
LLLudwig Lehle
Ludwig Lehle
HBHans Bakker
Hans Bakker

1 January 2010 in Journal of Biological Chemistry
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Journal Article
Open access
MSMaya K. Sethi
Maya K. Sethi
FBFalk F.R. Buettner
Falk F.R. Buettner
VKVadim B. Krylov
Vadim B. Krylov
HTHideyuki Takeuchi
Hideyuki Takeuchi
NNNikolay E. Nifantiev
Nikolay E. Nifantiev
HBHans Bakker
Hans Bakker
The epidermal growth factor repeats of the Notch receptor are extensively glycosylated with three different O-glycans. O-Fucosylation and elongation by the glycosyltransferase Fringe have been well studied and shown to be essential for proper Notch signaling. In contrast, biosynthesis of O-glucose and O-N-acetylglucosamine is less well understood. Recently, the isolation of the Drosophila mutant rumi has shown that absence of O-glucose impairs Notch function. O-Glucose is further extended by two contiguous alpha1,3-linked xylose residues. We have identified two enzymes of the human glycosyltransferase 8 family, now named GXYLT1 and GXYLT2 (glucoside xylosyltransferase), as UDP-d-xylose:beta-d-glucoside alpha1,3-d-xylosyltransferases adding the first xylose. The enzymes are specific for beta-glucose-terminating acceptors and UDP-xylose as donor substrate. Generation of the alpha1,3-linkage was confirmed by nuclear magnetic resonance. Activity on a natural acceptor could be shown by in vitro xylosylation of a Notch fragment expressed in a UDP-xylose-deficient cell line and in vivo by co-expression of the enzymes and the Notch fragment in insect cells followed by mass spectrometric analysis of peptide fragments.

6 June 2013 in PLOS Genetics
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TLTom V. Lee
Tom V. Lee
MSMaya K. Sethi
Maya K. Sethi
JLJessica Leonardi
Jessica Leonardi
NRNadia A. Rana
Nadia A. Rana
FBFalk F. R. Buettner
Falk F. R. Buettner
Hamed Jafar-NejadHamed Jafar-Nejad
Hamed Jafar-Nejad
The Notch signaling pathway controls a large number of processes during animal development and adult homeostasis. One of the conserved post-translational modifications of the Notch receptors is the addition of an O-linked glucose to epidermal growth factor-like (EGF) repeats with a C-X-S-X-(P/A)-C motif by Protein O-glucosyltransferase 1 (POGLUT1; Rumi in Drosophila). Genetic experiments in flies and mice, and in vivo structure-function analysis in flies indicate that O-glucose residues promote Notch signaling. The O-glucose residues on mammalian Notch1 and Notch2 proteins are efficiently extended by the addition of one or two xylose residues through the function of specific mammalian xylosyltransferases. However, the contribution of xylosylation to Notch signaling is not known. Here, we identify the Drosophila enzyme Shams responsible for the addition of xylose to O-glucose on EGF repeats. Surprisingly, loss- and gain-of-function experiments strongly suggest that xylose negatively regulates Notch signaling, opposite to the role played by glucose residues. Mass spectrometric analysis of Drosophila Notch indicates that addition of xylose to O-glucosylated Notch EGF repeats is limited to EGF14–20. A Notch transgene with mutations in the O-glucosylation sites of Notch EGF16–20 recapitulates the shams loss-of-function phenotypes, and suppresses the phenotypes caused by the overexpression of human xylosyltransferases. Antibody staining in animals with decreased Notch xylosylation indicates that xylose residues on EGF16–20 negatively regulate the surface expression of the Notch receptor. Our studies uncover a specific role for xylose in the regulation of the Drosophila Notch signaling, and suggest a previously unrecognized regulatory role for EGF16–20 of Notch. In multi-cellular organisms, neighboring cells need to communicate with each other to ensure proper cell fate decisions and differentiation. Signaling through the Notch receptors is the primary means by which local cell-cell communication is accomplished in animals. Given the broad usage of Notch signaling in animals and the host of human disease caused by Notch pathway misregulation, sophisticated mechanisms are required to adjust the strength of Notch signaling in each context. We have previously shown that addition of glucose residues to the Notch receptor promotes Notch signaling. Since these glucose residues on Notch can be extended by addition of xylose residues, we sought to determine whether xylose also plays a role in the regulation of Notch signaling. In contrast to glucose, we determine that xylose residues decrease Notch signaling in certain contexts by controlling Notch surface levels. Moreover, the xylose residues reside in a specific domain of Notch, unlike the glucose residues which are distributed throughout the Notch extracellular domain. Our data provide an example of signaling pathway regulation by altering the distribution of the short or elongated forms of a saccharide on a receptor protein, and offer a potential avenue for modulating Notch signaling as both a therapeutic modality and a tool in regenerative medicine.