Daniel L. Farkas

Dr. Daniel L. Farkas

Biomedical Engineering, University of Southern California, Los Angeles, California, USA

Research Focus & Metrics

Academic Career Length

17Years (2010-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 January 2011 in NeuroImage
Verified
Journal Article
Closed access
MKMaya Koronyo-Hamaoui
Maya Koronyo-Hamaoui
YKYosef Koronyo
Yosef Koronyo
ALAlexander V. Ljubimov
Alexander V. Ljubimov
CMCarol A. Miller
Carol A. Miller
MKMinHee K. Ko
MinHee K. Ko
DFDaniel L. Farkas
Daniel L. Farkas

12 May 2014 in Scientific Reports
Verified
Journal Article
Open access
PDF file
FVFartash Vasefi
Fartash Vasefi
Nicholas MacKinnonNicholas MacKinnon
Nicholas MacKinnon
RSRolf B. Saager
Rolf B. Saager
ADAnthony J. Durkin
Anthony J. Durkin
RCRobert Chave
Robert Chave
DFDaniel L. Farkas
Daniel L. Farkas
Attempts to understand the changes in the structure and physiology of human skin abnormalities by non-invasive optical imaging are aided by spectroscopic methods that quantify, at the molecular level, variations in tissue oxygenation and melanin distribution. However, current commercial and research systems to map hemoglobin and melanin do not correlate well with pathology for pigmented lesions or darker skin. We developed a multimode dermoscope that combines polarization and hyperspectral imaging with an efficient analytical model to map the distribution of specific skin bio-molecules. This corrects for the melanin-hemoglobin misestimation common to other systems, without resorting to complex and computationally intensive tissue optical models. For this system's proof of concept, human skin measurements on melanocytic nevus, vitiligo, and venous occlusion conditions were performed in volunteers. The resulting molecular distribution maps matched physiological and anatomical expectations, confirming a technologic approach that can be applied to next generation dermoscopes and having biological plausibility that is likely to appeal to dermatologists.

1 November 2012 in Journal of Controlled Release
Verified
Journal Article
Closed access
JHJae Youn Hwang
Jae Youn Hwang
DLDavid J. Lubow
David J. Lubow
DCDavid Chu
David Chu
JSJessica Sims
Jessica Sims
FAFelix Alonso-Valenteen
Felix Alonso-Valenteen
LMLali K. Medina-Kauwe
Lali K. Medina-Kauwe

13 January 2011 in Biomedical Optics Express
Verified
Journal Article
Open access
PDF file
JHJae Youn Hwang
Jae Youn Hwang
Sebastian Wachsmann-HogiuSebastian Wachsmann-Hogiu
Sebastian Wachsmann-Hogiu
VRV Krishnan Ramanujan
V Krishnan Ramanujan
ANAndreas G. Nowatzyk
Andreas G. Nowatzyk
YKYosef Koronyo
Yosef Koronyo
DFDaniel L. Farkas
Daniel L. Farkas
We report fast, non-scanning, wide-field two-photon fluorescence excitation with spectral and lifetime detection for in vivo biomedical applications. We determined the optical characteristics of the technique, developed a Gaussian flat-field correction method to reduce artifacts resulting from non-uniform excitation such that contrast is enhanced, and showed that it can be used for ex vivo and in vivo cellular-level imaging. Two applications were demonstrated: (i) ex vivo measurements of beta-amyloid plaques in retinas of transgenic mice, and (ii) in vivo imaging of sulfonated gallium(III) corroles injected into tumors. We demonstrate that wide-field two photon fluorescence excitation with flat-field correction provides more penetration depth as well as better contrast and axial resolution than the corresponding one-photon wide field excitation for the same dye. Importantly, when this technique is used together with spectral and fluorescence lifetime detection modules, it offers improved discrimination between fluorescence from molecules of interest and autofluorescence, with higher sensitivity and specificity for in vivo applications.

1 November 2016 in Journal of Biomedical Optics
Verified
Journal Article
Open access
PDF file
FVFartash Vasefi
Fartash Vasefi
Nicholas MacKinnonNicholas MacKinnon
Nicholas MacKinnon
RSRolf Saager
Rolf Saager
KKKristen M. Kelly
Kristen M. Kelly
TMTyler Maly
Tyler Maly
DFDaniel L. Farkas
Daniel L. Farkas
Changes in the pattern and distribution of both melanocytes (pigment producing) and vasculature (hemoglobin containing) are important in distinguishing melanocytic proliferations. The ability to accurately measure melanin distribution at different depths and to distinguish it from hemoglobin is clearly important when assessing pigmented lesions (benign versus malignant). We have developed a multimode hyperspectral dermoscope (SkinSpect™) able to more accurately image both melanin and hemoglobin distribution in skin. SkinSpect uses both hyperspectral and polarization-sensitive measurements. SkinSpect’s higher accuracy has been obtained by correcting for the effect of melanin absorption on hemoglobin absorption in measurements of melanocytic nevi. In vivo human skin pigmented nevi (N=20) were evaluated with the SkinSpect, and measured melanin and hemoglobin concentrations were compared with spatial frequency domain spectroscopy (SFDS) measurements. We confirm that both systems show low correlation of hemoglobin concentrations with regions containing different melanin concentrations (R=0.13 for SFDS, R=0.07 for SkinSpect).

1 January 2012 in Journal of Biomedical Optics
Verified
Journal Article
Closed access
PDF file
JHJae Youn Hwang
Jae Youn Hwang
DLDavid J. Lubow
David J. Lubow
JSJessica D. Sims
Jessica D. Sims
HGHarry B. Gray
Harry B. Gray
AMAtif Mahammed
Atif Mahammed
DFDaniel L. Farkas
Daniel L. Farkas
We recently reported that a targeted, brightly fluorescent gallium corrole (HerGa) is highly effective for breast tumor detection and treatment. Unlike structurally similar porphryins, HerGa exhibits tumor-targeted toxicity without the need for photoexcitation. We have now examined whether photoexcitation further modulates HerGa toxicity, using multimode optical imaging of live cells, including two-photon excited fluorescence, differential interference contrast (DIC), spectral, and lifetime imaging. Using two-photon excited fluorescence imaging, we observed that light at specific wavelengths augments the HerGa-mediated mitochondrial membrane potential disruption of breast cancer cells in situ. In addition, DIC, spectral, and fluorescence lifetime imaging enabled us to both validate cell damage by HerGa photoexcitation and investigate HerGa internalization, thus allowing optimization of light dose and timing. Our demonstration of HerGa phototoxicity opens the way for development of new methods of cancer intervention using tumor-targeted corroles.