Shahzad Ahmad Qureshi

Prof. Dr. Shahzad Ahmad Qureshi

Department of Computer and Information Sciences, Pakistan Institute of Engineering and Applied Sciences, Islamabad, Islāmābād, Pakistan
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Research Focus & Metrics

Academic Career Length

22Years (2005-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 April 2022 in Sensors
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Journal Article
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MZMumtaz Zahoor
Mumtaz Zahoor
Shahzad Ahmad QureshiShahzad Ahmad Qureshi
Shahzad Ahmad Qureshi
SBSameena Bibi
Sameena Bibi
DKDr. Saddam Hussain Khan
Dr. Saddam Hussain Khan
AKAsifullah Khan
Asifullah Khan
MBMuhammad Raheel Bhutta
Muhammad Raheel Bhutta
Brain tumor analysis is essential to the timely diagnosis and effective treatment of patients. Tumor analysis is challenging because of tumor morphology factors like size, location, texture, and heteromorphic appearance in medical images. In this regard, a novel two-phase deep learning-based framework is proposed to detect and categorize brain tumors in magnetic resonance images (MRIs). In the first phase, a novel deep-boosted features space and ensemble classifiers (DBFS-EC) scheme is proposed to effectively detect tumor MRI images from healthy individuals. The deep-boosted feature space is achieved through customized and well-performing deep convolutional neural networks (CNNs), and consequently, fed into the ensemble of machine learning (ML) classifiers. While in the second phase, a new hybrid features fusion-based brain-tumor classification approach is proposed, comprised of both static and dynamic features with an ML classifier to categorize different tumor types. The dynamic features are extracted from the proposed brain region-edge net (BRAIN-RENet) CNN, which is able to learn the heteromorphic and inconsistent behavior of various tumors. In contrast, the static features are extracted by using a histogram of gradients (HOG) feature descriptor. The effectiveness of the proposed two-phase brain tumor analysis framework is validated on two standard benchmark datasets, which were collected from Kaggle and Figshare and contain different types of tumors, including glioma, meningioma, pituitary, and normal images. Experimental results suggest that the proposed DBFS-EC detection scheme outperforms the standard and achieved accuracy (99.56%), precision (0.9991), recall (0.9899), F1-Score (0.9945), MCC (0.9892), and AUC-PR (0.9990). The classification scheme, based on the fusion of feature spaces of proposed BRAIN-RENet and HOG, outperform state-of-the-art methods significantly in terms of recall (0.9913), precision (0.9906), accuracy (99.20%), and F1-Score (0.9909) in the CE-MRI dataset.

7 April 2022 in Applied Sciences
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Shahzad Ahmad QureshiShahzad Ahmad Qureshi
Shahzad Ahmad Qureshi
SAShan E Ahmed
Shan E Ahmed
LHLal Hussain
Lal Hussain
AMAreej A. Malibari
Areej A. Malibari
MNMohamed K. Nour
Mohamed K. Nour
AHAnwer M Hilal
Anwer M Hilal
The diagnosis and surgical resection using Magnetic Resonance (MR) images in brain tumors is a challenging task to minimize the neurological defects after surgery owing to the non-linear nature of the size, shape, and textural variation. Radiologists, clinical experts, and brain surgeons examine brain MRI scans using the available methods, which are tedious, error-prone, time-consuming, and still exhibit positional accuracy up to 2–3 mm, which is very high in the case of brain cells. In this context, we propose an automated Ultra-Light Brain Tumor Detection (UL-BTD) system based on a novel Ultra-Light Deep Learning Architecture (UL-DLA) for deep features, integrated with highly distinctive textural features, extracted by Gray Level Co-occurrence Matrix (GLCM). It forms a Hybrid Feature Space (HFS), which is used for tumor detection using Support Vector Machine (SVM), culminating in high prediction accuracy and optimum false negatives with limited network size to fit within the average GPU resources of a modern PC system. The objective of this study is to categorize multi-class publicly available MRI brain tumor datasets with a minimum time thus real-time tumor detection can be carried out without compromising accuracy. Our proposed framework includes a sensitivity analysis of image size, One-versus-All and One-versus-One coding schemes with stringent efforts to assess the complexity and reliability performance of the proposed system with K-fold cross-validation as a part of the evaluation protocol. The best generalization achieved using SVM has an average detection rate of 99.23% (99.18%, 98.86%, and 99.67%), and F-measure of 0.99 (0.99, 0.98, and 0.99) for (glioma, meningioma, and pituitary tumors), respectively. Our results have been found to improve the state-of-the-art (97.30%) by 2%, indicating that the system exhibits capability for translation in modern hospitals during real-time surgical brain applications. The method needs 11.69 ms with an accuracy of 99.23% compared to 15 ms achieved by the state-of-the-art to earlier to detect tumors on a test image without any dedicated hardware providing a route for a desktop application in brain surgery.

1 March 2021 in Photodiagnosis and Photodynamic Therapy
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Journal Article
Closed access
ARAziz ul Rehman
Aziz ul Rehman
Shahzad Ahmad QureshiShahzad Ahmad Qureshi
Shahzad Ahmad Qureshi

25 February 2023 in Scientific Reports
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Shahzad Ahmad QureshiShahzad Ahmad Qureshi
Shahzad Ahmad Qureshi
LHLal Hussain
Lal Hussain
UIUsama Ibrar
Usama Ibrar
EAEatedal Alabdulkreem
Eatedal Alabdulkreem
MNMohamed K. Nour
Mohamed K. Nour
TDTim Q. Duong
Tim Q. Duong
Accurate radiogenomic classification of brain tumors is important to improve the standard of diagnosis, prognosis, and treatment planning for patients with glioblastoma. In this study, we propose a novel two-stage MGMT Promoter Methylation Prediction (MGMT-PMP) system that extracts latent features fused with radiomic features predicting the genetic subtype of glioblastoma. A novel fine-tuned deep learning architecture, namely Deep Learning Radiomic Feature Extraction (DLRFE) module, is proposed for latent feature extraction that fuses the quantitative knowledge to the spatial distribution and the size of tumorous structure through radiomic features: (GLCM, HOG, and LBP). The application of the novice rejection algorithm has been found significantly effective in selecting and isolating the negative training instances out of the original dataset. The fused feature vectors are then used for training and testing byk-NN and SVM classifiers. The 2021 RSNA Brain Tumor challenge dataset (BraTS-2021) consists of four structural mpMRIs, viz. fluid-attenuated inversion-recovery, T1-weighted, T1-weighted contrast enhancement, and T2-weighted. We evaluated the classification performance, for the very first time in published form, in terms of measures like accuracy, F1-score, and Matthews correlation coefficient. The Jackknife tenfold cross-validation was used for training and testing BraTS-2021 dataset validation. The highest classification performance is (96.84 ± 0.09)%, (96.08 ± 0.10)%, and (97.44 ± 0.14)% as accuracy, sensitivity, and specificity respectively to detect MGMT methylation status for patients suffering from glioblastoma. Deep learning feature extraction with radiogenomic features, fusing imaging phenotypes and molecular structure, using rejection algorithm has been found to perform outclass capable of detecting MGMT methylation status of glioblastoma patients. The approach relates the genomic variation with radiomic features forming a bridge between two areas of research that may prove useful for clinical treatment planning leading to better outcomes.

19 December 2022 in Biosensors
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Shahzad Ahmad QureshiShahzad Ahmad Qureshi
Shahzad Ahmad Qureshi
Wesley Wei-Wen HsiaoWesley Wei-Wen Hsiao
Wesley Wei-Wen Hsiao
LHLal Hussain
Lal Hussain
HAHaroon Aman
Haroon Aman
TLTrong-Nghia Le
Trong-Nghia Le
MRMuhammad Rafique
Muhammad Rafique
The ability to precisely monitor the intracellular temperature directly contributes to the essential understanding of biological metabolism, intracellular signaling, thermogenesis, and respiration. The intracellular heat generation and its measurement can also assist in the prediction of the pathogenesis of chronic diseases. However, intracellular thermometry without altering the biochemical reactions and cellular membrane damage is challenging, requiring appropriately biocompatible, nontoxic, and efficient biosensors. Bright, photostable, and functionalized fluorescent nanodiamonds (FNDs) have emerged as excellent probes for intracellular thermometry and magnetometry with the spatial resolution on a nanometer scale. The temperature and magnetic field-dependent luminescence of naturally occurring defects in diamonds are key to high-sensitivity biosensing applications. Alterations in the surface chemistry of FNDs and conjugation with polymer, metallic, and magnetic nanoparticles have opened vast possibilities for drug delivery, diagnosis, nanomedicine, and magnetic hyperthermia. This study covers some recently reported research focusing on intracellular thermometry, magnetic sensing, and emerging applications of artificial intelligence (AI) in biomedical imaging. We extend the application of FNDs as biosensors toward disease diagnosis by using intracellular, stationary, and time-dependent information. Furthermore, the potential of machine learning (ML) and AI algorithms for developing biosensors can revolutionize any future outbreak.

30 March 2022 in IEEE Access
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Journal Article
Open access
AMAdil Aslam Aslam Mir
Adil Aslam Aslam Mir
FCFatih V. Celebi
Fatih V. Celebi
HAHadeel Alsolai
Hadeel Alsolai
Shahzad Ahmad QureshiShahzad Ahmad Qureshi
Shahzad Ahmad Qureshi
MRMuhammad Rafique
Muhammad Rafique
MHManar Ahmed Hamza
Manar Ahmed Hamza
The ability to predict the radioactive soil radon gas concentration is important for human beings because it serves as a precursor to earthquakes. Several studies have been conducted across the globe to confirm the correlation of radon emission dynamics and earthquakes, and concluded that the soil radon gas is the witness of anomalous behaviour before the occurrences of several earthquakes. This anomalous behavior can help to construct a better prediction model for earthquake forecasting. This paper aims at employing different ensemble and individual machine learning methods on real time radon time series data with different scenarios to predict anomalies in data caused by the seismic activities.The ensemble methods include boosted tree, bagged cart and boosted linear model while standalone machine learning methods include support vector machine with linear and radial kernels and k-nearest neighbors ( ${K}$ -NN). We tested the methods on a dataset recorded on the fault line located in Muzaffarabad. Time series data was collected over a period ranging from March 1, 2017 to May 11, 2018 including nine(09) earthquakes. The methods are tested in four different settings with 10 times 10 folds cross validation procedure over the time window of 1 to 4. The repeated 10 fold cross validation is performed to reduce the noise in the model performance estimation by replicating the 10 fold cross validation procedure 10 times. Statistical performance evaluation measures viz. root mean square error (RMSE), root mean squared log error (RMSLE), mean absolute percentage error (MAPE), percentage bias (PB), and mean squared error (MSE) have been calculated for the assessment of performance. In setting 1, the support vector machine with radial kernel performs better with the minimum RMSE score of 1381.023 when compared to other prediction models. In setting 3, it can be observed through different performance metrics such as RMSE, the value in the range [1262.864, 1409.616] which is minimum when other prediction models for predicting soil radon gas concentration dataset. For setting 4, the boosted tree model yielded the minimum RMSE and MAPE scores of 1573.174 and 0.056 respectively. Findings of the study shows that boosted tree and support vector machine with radial kernel proved to be better regression models for the prediction of anomalies in soil radon gas concentration during seismic activities. An important finding of this study suggests that by employing boosted tree ensemble method make us able to accurately predict soil radon gas concentration automatically from environmental parameters.