Yi Shi

Dr. Yi Shi

orcid

Research Focus & Metrics

Academic Career Length

8Years (2019-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 October 2020 in Journal of Environmental Sciences
Verified
Journal Article
Closed access
YSYi Shi
Yi Shi
ABAkintunde Babatunde
Akintunde Babatunde
BBBettina Bockelmann-Evans
Bettina Bockelmann-Evans
Qijie LiQijie Li
Qijie Li
LZLiang Zhang
Liang Zhang

11 January 2022 in Processes
Verified
Journal Article
Open access
PDF file
WCWeiran Chu
Weiran Chu
YSYi Shi
Yi Shi
Liang ZhangLiang Zhang
Liang Zhang
As non-renewable resource, the recovery and utilization of phosphorus from wastewater is an enduring topic. Stimulated by the advances in research on polyphosphates (polyP) as well as the development of Enhanced Biological Phosphorus Removal (EBPR) technology to achieve the efficient accumulation of polyP via polyphosphate accumulating organisms (PAOs), a novel phosphorus removal strategy is considered with promising potential for application in real wastewater treatment processes. This review mainly focuses on the mechanism of phosphorus aggregation in the form of polyP during the phosphate removal process. Further discussion about the reuse of polyP with different chain lengths is provided herein so as to suggest possible application pathways for this biosynthetic product.

22 January 2022 in Enzyme and Microbial Technology
Verified
Journal Article
Closed access
DMDanlei Ma
Danlei Ma
YXYu Xin
Yu Xin
Zitao GuoZitao Guo
Zitao Guo
YSYi Shi
Yi Shi
Liang ZhangLiang Zhang
Liang Zhang
GSGuiyang Shi
Guiyang Shi

Verified
Journal Article
Open access
PDF file
ZWZilong Wang
Zilong Wang
YFYakun Fang
Yakun Fang
YSYi Shi
Yi Shi
YXYu Xin
Yu Xin
ZGZhengHua Gu
ZhengHua Gu
Liang ZhangLiang Zhang
Liang Zhang
With numerous industrial applications, Paenibacillus polymyxa has been accepted as the candidate of the cell factory for many secondary metabolites. However, as the regulatory expression elements in P. polymyxa have not been systematically investigated, genetic modification on account of a specific metabolism pathway for the strain is limited. In this study, a xylose-inducible operon in the xylan-utilizing bacterium ATCC842 was identified, and the relative operon transcription was increased to 186-fold in the presence of xylose, while the relative enhanced green fluorescent protein (eGFP) fluorescence intensity was promoted by over four-fold. By contrast, glucose downregulated the operon to 0.5-fold that of the control. The binding site of the operon was “ACTTAGTTTAAGCAATAGACAAAGT”, and this can be degenerated to “ACTTWGTTTAWSSNATAVACAAAGT” in Paenibacillus spp., which differs from that in the Bacillus spp. xylose operon. The xylose operon binding site was transplanted to the constitutive promoter Pshuttle-09. The eGFP fluorescence intensity assay indicated that both the modified and original Pshuttle-09 had similar expression levels after induction, and the expression level of the modified promoter was decreased to 19.8% without induction. This research indicates that the operon has great potential as an ideal synthetic biology tool in Paenibacillus spp. that can dynamically regulate its gene circuit strength through xylose.

Verified
Journal Article
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TYTing Yang
Ting Yang
YSYi Shi
Yi Shi
QYQian Yang
Qian Yang
YXYu Xin
Yu Xin
ZGZhenghua Gu
Zhenghua Gu
Liang ZhangLiang Zhang
Liang Zhang
Aerobic denitrification is considered as a promising biological method to eliminate the nitrate contaminants in waterbodies. However, the molecular mechanism of this process varies in different functional bacteria. In this study, the nitrogen removal characteristics for a newly isolated aerobic denitrifier Bacillus subtilis JD-014 were investigated, and the potential functional genes involved in the aerobic denitrification process were further screened through transcriptome analysis. JD-014 exhibited efficient denitrification performance when having sodium succinate as the carbon source with the range of nitrate concentration between 50 and 300 mg/L. Following the transcriptome data, most of the up-regulated differentially expressed genes (DEGs) were associated with cell motility, carbohydrate metabolism, and energy metabolism. Moreover, gene nirsir annotated as sulfite reductase was screened out and further identified as a regulator participating in the nitrogen removal process within JD-014. The findings in present study provide meaningful information in terms of a comprehensive understanding of genetic regulation of nitrogen metabolism, especially for Bacillus strains.

26 August 2021 in Polymers
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Journal Article
Open access
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SCShi Cheng
Shi Cheng
Zitao GuoZitao Guo
Zitao Guo
CLChaojuan Liang
Chaojuan Liang
YSYi Shi
Yi Shi
PGPeng Geng
Peng Geng
Liang ZhangLiang Zhang
Liang Zhang
In this study, four kinds of phospholipase A1-metal (Al/Co/Cu/Mn) hybrid nanostructures were prepared for enhancing the stability of the free PLA1. The formed hybrid complexes were characterized by scanning electron microscope (SEM), Fourier infrared spectroscopy (FTIR), and X-ray diffraction (XRD). The stability and substrate specificity of immobilized enzymes were subsequently determined. After immobilization, the temperature tolerance of PLA1–metal hybrid nanostructures was enhanced. The relative activity of PLA1–Al/Co/Cu hybrid nanostructures remained above 60% at 50 °C, while that of free enzyme was below 5%. The thermal transition temperature measured by differential scanning calorimetry (DSC) was found to increase from 65.59 °C (free enzyme) to 173.14 °C, 123.67 °C, 96.31 °C, and 114.79 °C, referring to PLA1–Cu/Co/Al/Mn hybrid nanostructures, respectively. Additionally, after a storage for fourteen days at 4 °C, the immobilized enzymes could exhibit approximately 60% of the initial activity, while the free PLA1 was inactivated after four days of storage. In brief, using Co2+, Cu2+, Al3+, and Mn2+ as the hybridization materials for immobilization could improve the catalytic properties and stability of the free PLA1, suggesting a promising method for a wider application of PLA1 in many fields such as food, cosmetics, and the pharmaceutical industry.