Isabelle Lopes

Prof. Isabelle Lopes

UFRJ
orcid

Research Focus & Metrics

Academic Career Length

7Years (2020-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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7 May 2021 in Microorganisms
Verified
Journal Article
Open access
PDF file
ACAnna Canellas
Anna Canellas
Isabelle LopesIsabelle Lopes
Isabelle Lopes
MMMarianne P. Mello
Marianne P. Mello
RPRodolfo Paranhos
Rodolfo Paranhos
Bruno Francesco Rodrigues de OliveiraBruno Francesco Rodrigues de Oliveira
Bruno Francesco Rodrigues de Oliveira
MLMarinella Laport
Marinella Laport
The genus Vibrio comprises pathogens ubiquitous to marine environments. This study evaluated the cultivable Vibrio community in the Guanabara Bay (GB), a recreational, yet heavily polluted estuary in Rio de Janeiro, Brazil. Over one year, 66 water samples from three locations along a pollution gradient were investigated. Isolates were identified by MALDI-TOF mass spectrometry, revealing 20 Vibrio species, including several potential pathogens. Antimicrobial susceptibility testing confirmed resistance to aminoglycosides, beta-lactams (including carbapenems and third-generation cephalosporins), fluoroquinolones, sulfonamides, and tetracyclines. Four strains were producers of extended-spectrum beta-lactamases (ESBL), all of which carried beta-lactam and heavy metal resistance genes. The toxR gene was detected in all V. parahaemolyticus strains, although none carried the tdh or trh genes. Higher bacterial isolation rates occurred in months marked by higher water temperatures, lower salinities, and lower phosphorus and nitrogen concentrations. The presence of non-susceptible Vibrio spp. was related to indicators of eutrophication and sewage inflow. DNA fingerprinting analyses revealed that V. harveyi and V. parahaemolyticus strains non-susceptible to antimicrobials might persist in these waters throughout the year. Our findings indicate the presence of antimicrobial-resistant and potentially pathogenic Vibrio spp. in a recreational environment, raising concerns about the possible risks of human exposure to these waters.

12 December 2020 in Microorganisms
Verified
Journal Article
Open access
PDF file
Bruno Francesco Rodrigues de OliveiraBruno Francesco Rodrigues de Oliveira
Bruno Francesco Rodrigues de Oliveira
Isabelle LopesIsabelle Lopes
Isabelle Lopes
ACAnna Canellas
Anna Canellas
GMGuilherme Muricy
Guilherme Muricy
ADAlan Dobson
Alan Dobson
MLMarinella Laport
Marinella Laport
Marine sponges are excellent examples of invertebrate–microbe symbioses. In this holobiont, the partnership has elegantly evolved by either transmitting key microbial associates through the host germline and/or capturing microorganisms from the surrounding seawater. We report here on the prokaryotic microbiota during different developmental stages of Plakina cyanorosea and their surrounding environmental samples by a 16S rRNA metabarcoding approach. In comparison with their source adults, larvae housed slightly richer and more diverse microbial communities, which are structurally more related to the environmental microbiota. In addition to the thaumarchaeal Nitrosopumilus, parental sponges were broadly dominated by Alpha- and Gamma-proteobacteria, while the offspring were particularly enriched in the Vibrionales, Alteromonodales, Enterobacterales orders and the Clostridia and Bacteroidia classes. An enterobacterial operational taxonomic unit (OTU) was the dominant member of the strict core microbiota. The most abundant and unique OTUs were not significantly enriched amongst the microbiomes from host specimens included in the sponge microbiome project. In a wider context, Oscarella and Plakina are the sponge genera with higher divergence in their associated microbiota compared to their Homoscleromorpha counterparts. Our results indicate that P. cyanorosea is a low microbial abundance sponge (LMA), which appears to heavily depend on the horizontal transmission of its microbial partners that likely help the sponge host in the adaptation to its habitat.

9 March 2022 in Aquaculture
Verified
Journal Article
Closed access
ACAnna Canellas
Anna Canellas
WCWellington Felipe Costa
Wellington Felipe Costa
JFJéssyca Freitas-Silva
Jéssyca Freitas-Silva
Isabelle LopesIsabelle Lopes
Isabelle Lopes
Bruno Francesco Rodrigues de OliveiraBruno Francesco Rodrigues de Oliveira
Bruno Francesco Rodrigues de Oliveira
MLMarinella Laport
Marinella Laport

29 May 2025 in Critical Reviews in Microbiology
Verified
Journal Article
Closed access
ACAnna Canellas
Anna Canellas
GDGabriel Rodrigues Dias
Gabriel Rodrigues Dias
Isabelle LopesIsabelle Lopes
Isabelle Lopes
JFJéssyca Freitas-Silva
Jéssyca Freitas-Silva
ADAlan Dobson
Alan Dobson
Bruno Francesco Rodrigues de OliveiraBruno Francesco Rodrigues de Oliveira
Bruno Francesco Rodrigues de Oliveira
Biofilms are one of the most successful modes of life in the biosphere. In these assemblages, bacteria usually display higher resistance to environmental stressors, thus making their removal through the use of conventional approaches significantly more difficult. Currently, biofilms are one of the major challenges in healthcare settings, often resulting in higher mortality and morbidity rates. Therefore, seeking alternative approaches to manage biofilm-related infections is important. In the last decades, marine microbiomes have been increasingly harnessed as sources of molecules with wide-ranging applications in both the biomedical and pharmaceutical sectors. This review focuses on enzymes as potential antibiofilm agents, more specifically those derived from marine prokaryotes. An overview of the recent findings regarding four main classes of biofilm-disrupting enzymes and their respective marine microbial producers, namely nucleases, dextranases, alginate lyases, and peptidases is provided. Key biochemical and activity-related features from the current literature are presented to showcase the potential of these biocatalysts for biofilm control and prevention. Future research directions are also discussed, highlighting factors and strategies for successful prospecting of antibiofilm enzymes from marine microbiomes. By offering a snapshot of this infant but promising field, this review evidences the marine environment as a fruitful biocatalytic reservoirs of antibiofilm agents.

1 November 2021 in International Journal of Biological Macromolecules
Verified
Journal Article
Closed access
Bruno Francesco Rodrigues de OliveiraBruno Francesco Rodrigues de Oliveira
Bruno Francesco Rodrigues de Oliveira
Isabelle LopesIsabelle Lopes
Isabelle Lopes
ACAnna Canellas
Anna Canellas
GMGuilherme Muricy
Guilherme Muricy
Stephen A JacksonStephen A Jackson
Stephen A Jackson
MLMarinella Laport
Marinella Laport