A new method was developed, evaluated, and applied to generate a global dataset of growing-season chlorophyll-a (chl) concentrations in 2011 for freshwater lakes. Chl observations from freshwater lakes are valuable for estimating lake productivity as well as assessing the role that these lakes play in carbon budgets. The standard 4 km NASA OceanColor L3 chlorophyll concentration products generated from MODIS and MERIS sensor data are not sufficiently representative of global chl values because these can only resolve larger lakes, which generally have lower chl concentrations than lakes of smaller surface area. Our new methodology utilizes the 300 m-resolution MERIS full-resolution full-swath (FRS) global dataset as input and does not rely on the land mask used to generate standard NASA products, which masks many lakes that are otherwise resolvable in MERIS imagery. The new method produced chl concentration values for 78,938 and 1,074 lakes in the northern and southern hemispheres, respectively. The mean chl for lakes visible in the MERIS composite was 19.2 ± 19.2, the median was 13.3, and the interquartile range was 3.90–28.6 mg m⁻³. The accuracy of the MERIS-derived values was assessed by comparison with temporally near-coincident and globally distributed in situ measurements from the literature (n = 185, RMSE = 9.39, R² = 0.72). This represents the first global-scale dataset of satellite-derived chl estimates for medium to large lakes.

Large freshwater lakes provide immense value to the surrounding populations, yet there is limited understanding of how these lakes will respond to climate change and other factors. This study uses satellite remote sensing to estimate annual, lake-wide primary production in 11 of the world’s largest lakes from 2003–2018. These lakes include the five Laurentian Great Lakes, the three African Great Lakes, Lake Baikal, and Great Bear and Great Slave Lakes. Mean annual production in these lakes ranged from under 200 mgC/m²/day to over 1100 mgC/m²/day, and the lakes were placed into one of three distinct groups (oligotrophic, mesotrophic, or eutrophic) based on their level of production. The analysis revealed only three lakes with significant production trends over the study period, with increases in Great Bear Lake (24% increase over the study period) and Great Slave Lake (27%) and a decline in Lake Tanganyika (−16%). These changes appear to be related to climate change, including increasing temperatures and solar radiation and decreasing wind speeds. This study is the first to use consistent methodology to study primary production in the world’s largest lakes, allowing for these novel between-lake comparisons and assessment of inter-annual trends.

An advanced operational semi-empirical algorithm for processing satellite remote sensing data in the visible region is described. Based on the Levenberg-Marquardt multivariate optimization procedure, the algorithm is developed for retrieving major water colour producing agents: chlorophyll-a, suspended minerals and dissolved organics. Two assurance units incorporated by the algorithm are intended to flag pixels with inaccurate atmospheric correction and specific hydro-optical properties not covered by the applied hydro-optical model. The hydro-optical model is a set of spectral cross-sections of absorption and backscattering of the colour producing agents. The combination of the optimization procedure and a replaceable hydro-optical model makes the developed algorithm not specific to a particular satellite sensor or a water body. The algorithm performance efficiency is amply illustrated for SeaWiFS, MODIS and MERIS images over a variety of water bodies.

Where light penetration is excellent, the combination of LiDAR (Light Detection And Ranging) and passive bottom reflectance (multispectral, hyperspectral) greatly aids environmental studies. Over a century ago, two stamp mills (Mohawk and Wolverine) released 22.7 million metric tons of copper-rich tailings into Grand Traverse Bay (Lake Superior). The tailings are crushed basalt, with low albedo and spectral signatures different from natural bedrock (Jacobsville Sandstone) and bedrock-derived quartz sands. Multiple Lidar (CHARTS and CZMIL) over-flights between 2008–2016—complemented by ground-truth (Ponar sediment sampling, ROV photography) and passive bottom reflectance studies (3-band NAIP; 13-band Sentinal-2 orbital satellite; 48 and 288-band CASI)—clarified shoreline and underwater details of tailings migrations. Underwater, the tailings are moving onto Buffalo Reef, a major breeding site important for commercial and recreational lake trout and lake whitefish production (32% of the commercial catch in Keweenaw Bay, 22% in southern Lake Superior). If nothing is done, LiDAR-assisted hydrodynamic modeling predicts 60% tailings cover of Buffalo Reef within 10 years. Bottom reflectance studies confirmed stamp sand encroachment into cobble beds in shallow (0-5m) water but had difficulties in deeper waters (>8 m). Two substrate end-members (sand particles) showed extensive mixing but were handled by CASI hyperspectral imaging. Bottom reflectance studies suggested 25-35% tailings cover of Buffalo Reef, comparable to estimates from independent counts of mixed sand particles (ca. 35% cover of Buffalo Reef by >20% stamp sand mixtures).

Remote sensing approaches that could identify species of submerged aquatic vegetation (SAV) and measure their extent in lake littoral zones would greatly enhance SAV study and management, especially if these approaches can provide faster or more accurate results than traditional field methods. Remote sensing with multispectral sensors can provide this capability, but SAV identification with this technology must address the challenges of light extinction in aquatic environments where chlorophyll, dissolved organic carbon, and suspended minerals can affect water clarity and the strength of the sensed light signal. Here, we present an uncrewed aerial system (UAS)-enabled methodology to identify the extent of the invasive SAV species Myriophyllum spicatum (Eurasian watermilfoil, or EWM), primarily using a six-band Tetracam multispectral camera, flown over sites in the Les Cheneaux Islands area of northwestern Lake Huron, Michigan, USA. We analyzed water chemistry and light data and found our sites clustered into sites with higher and lower water clarity, although all sites had relatively high water clarity. The overall average accuracy achieved was 76.7%, with 78.7% producer’s and 77.6% user’s accuracy for the EWM. These accuracies were higher than previously reported from other studies that used remote sensing to map SAV. Our study found that two tested scale parameters did not lead to significantly different classification accuracies between sites with higher and lower water clarity. The EWM classification methodology described here should be applicable to other SAV species, especially if they have growth patterns that lead to high amounts of biomass relative to other species in the upper water column, which can be detected with the type of red-edge and infrared sensors deployed for this study.