Saba Shamim

Dr. Saba Shamim


Research Focus & Metrics

Academic Career Length

14Years (2013-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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31 May 2022 in Frontiers in Microbiology
Verified
Journal Article
Open access
SHSarfraz Hussain
Sarfraz Hussain
MKMaryam Khan
Maryam Khan
TSTaha Majid Mahmood Sheikh
Taha Majid Mahmood Sheikh
MMMuhammad Zahid Mumtaz
Muhammad Zahid Mumtaz
TCTalha Ali Chohan
Talha Ali Chohan
YLyuhong liu
yuhong liu
Zinc (Zn) is one of the most abundantly found heavy metals in the Earth’s crust and is reported to be an essential trace metal required for the growth of living beings, with it being a cofactor of major proteins, and mediating the regulation of several immunomodulatory functions. However, its essentiality also runs parallel to its toxicity, which is induced through various anthropogenic sources, constant exposure to polluted sites, and other natural phenomena. The bioavailability of Zn is attributable to various vegetables, beef, and dairy products, which are a good source of Zn for safe consumption by humans. However, conditions of Zn toxicity can also occur through the overdosage of Zn supplements, which is increasing at an alarming rate attributing to lack of awareness. Though Zn toxicity in humans is a treatable and non-life-threatening condition, several symptoms cause distress to human activities and lifestyle, including fever, breathing difficulty, nausea, chest pain, and cough. In the environment, Zn is generally found in soil and water bodies, where it is introduced through the action of weathering, and release of industrial effluents, respectively. Excessive levels of Zn in these sources can alter soil and aquatic microbial diversity, and can thus affect the bioavailability and absorption of other metals as well. Several Gram-positive and -negative species, such as Bacillus sp., Staphylococcus sp., Streptococcus sp., and Escherichia coli, Pseudomonas sp., Klebsiella sp., and Enterobacter sp., respectively, have been reported to be promising agents of Zn bioremediation. This review intends to present an overview of Zn and its properties, uses, bioavailability, toxicity, as well as the major mechanisms involved in its bioremediation from polluted soil and wastewaters.

30 July 2021 in Microorganisms
Verified
Journal Article
Open access
PDF file
BABadriyah Alotaibi
Badriyah Alotaibi
MKMaryam Khan
Maryam Khan
SSSaba Shamim
Saba Shamim
The rise of anthropogenic activities has resulted in the increasing release of various contaminants into the environment, jeopardizing fragile ecosystems in the process. Heavy metals are one of the major pollutants that contribute to the escalating problem of environmental pollution, being primarily introduced in sensitive ecological habitats through industrial effluents, wastewater, as well as sewage of various industries. Where heavy metals like zinc, copper, manganese, and nickel serve key roles in regulating different biological processes in living systems, many heavy metals can be toxic even at low concentrations, such as mercury, arsenic, cadmium, chromium, and lead, and can accumulate in intricate food chains resulting in health concerns. Over the years, many physical and chemical methods of heavy metal removal have essentially been investigated, but their disadvantages like the generation of chemical waste, complex downstream processing, and the uneconomical cost of both methods, have rendered them inefficient,. Since then, microbial bioremediation, particularly the use of bacteria, has gained attention due to the feasibility and efficiency of using them in removing heavy metals from contaminated environments. Bacteria have several methods of processing heavy metals through general resistance mechanisms, biosorption, adsorption, and efflux mechanisms. Bacillus spp. are model Gram-positive bacteria that have been studied extensively for their biosorption abilities and molecular mechanisms that enable their survival as well as their ability to remove and detoxify heavy metals. This review aims to highlight the molecular methods of Bacillus spp. in removing various heavy metals ions from contaminated environments.

18 July 2018
Verified
Book Chapter
Open access
PDF file
SSSaba Shamim
Saba Shamim
Industrialization has led to introduction of heavy metals in the environment. Heavy metals are known to persist in the environment and become a risk for organisms. Micro-organisms are present in industrial effluents. They have adopted different strategies to cope up with the harmful effects of these metals. These strategies can be metabolism dependent or independent. One such strategy is biosorption which is binding of metal ions with metal binding proteins present on the cell wall. Biosorption is exhibited by bacteria, algae, fungi and yeasts. Not only living organisms, but also residuals of dead bodies of microorganisms shows biosorbent properties like agricultural wastes including husk, seeds, peels and stalks of different crops. Different factors affect the rate of biosorption which includes temperature, pH, nature of biosorbents, surface area to volume ratio, concentration of biomass, initial metal ion concentration and metal affinity to biosorbent. Various models including Freundlich model and Langmuir model can be used to describe biosorption. Recovery of biosorbed metals can be done using agents like thiosulfate, mineral acids and organic acids. Choice of desorption agent should be carefully selected to prevent alteration of physical properties of a biosorbent.

30 November 2021 in Microorganisms
Verified
Journal Article
Open access
PDF file
MZMuhammad Zakir
Muhammad Zakir
MKMaryam Khan
Maryam Khan
MUMuhammad Ihtisham Umar
Muhammad Ihtisham Umar
GMGhulam Murtaza
Ghulam Murtaza
MAMuhammad Ashraf
Muhammad Ashraf
SSSaba Shamim
Saba Shamim
Salmonella Typhi is a Gram-negative pathogen that causes typhoid fever in humans. The use of antibiotics to treat typhoid has considerably mitigated its fatality risk, but rising multidrug-resistant (MDR) and extensively drug-resistant (XDR) resistance in Pakistan threatens effective treatment. This study determined the prevalence of MDR and XDR S. Typhi at a local hospital in Lahore. Blood samples (n = 3000) were obtained and processed for bacterial identification. Antibiotic susceptibility test was performed using VITEK® 2 Compound 30 System. Statistical data analysis was performed using a Mann–Whitney U and Kruskal–Wallis H test, respectively. The results revealed 600 positive cultures, of which the majority were found to be XDR S. Typhi (46.1%) and MDR S. Typhi (24.5%) strains. The disease burden of resistant Salmonella strains was greater in males (60.67%) than females (39.33%), with the most affected age group being 0–10 years old (70.4 %). In both the outpatient department (OPD) and general ward, the prevalence of XDR S. Typhi cases was found to be alarmingly high (48.24%), followed by MDR S. Typhi (25.04 %). The results of the statistical analysis demonstrated that the incidence of resistance in MDR and XDR S. Typhi strains was not affected by the age as well as the gender of patients (p > 0.05). The occurrence of resistant strains against four tested antibiotics (azithromycin, ciprofloxacin, imipenem, and meropenem) was found to be similar in different wards and among hospitalized and OPD patients (p > 0.05). Maximum resistance was observed against chloramphenicol and ampicillin in the OPD and pediatric ward. Piperacillin/Tazobactam was observed to be the most effective antibiotic, followed by co-amoxiclav (p < 0.001). This study is effective in validating the existence of MDR and XDR S. Typhi in Lahore, where stringent methods should be applied for controlling its spread.

11 October 2022 in Microorganisms
Verified
Journal Article
Open access
PDF file
MKMaryam Khan
Maryam Khan
SSSaba Shamim
Saba Shamim
Salmonella enterica serovar Typhi (S. Typhi) is a Gram-negative pathogen that causes typhoid fever in humans. Though many serotypes of Salmonella spp. are capable of causing disease in both humans and animals alike, S. Typhi and S. Paratyphi are common in human hosts only. The global burden of typhoid fever is attributable to more than 27 million cases each year and approximately 200,000 deaths worldwide, with many regions such as Africa, South and Southeast Asia being the most affected in the world. The pathogen is able to cause disease in hosts by evading defense systems, adhesion to epithelial cells, and survival in host cells in the presence of several virulence factors, mediated by virulence plasmids and genes clustered in distinct regions known as Salmonella pathogenicity islands (SPIs). These factors, coupled with plasmid-mediated antimicrobial resistance genes, enable the bacterium to become resistant to various broad-spectrum antibiotics used in the treatment of typhoid fever and other infections caused by Salmonella spp. The emergence of multidrug-resistant (MDR) and extensively drug-resistant (XDR) strains in many countries of the world has raised great concern over the rise of antibiotic resistance in pathogens such as S. Typhi. In order to identify the key virulence factors involved in S. Typhi pathogenesis and infection, this review delves into various mechanisms of virulence, pathogenicity, and antimicrobial resistance to reinforce efficacious disease management.

5 March 2014 in Archives of Environmental Contamination and Toxicology
Verified
Journal Article
Closed access
PDF file
SSSaba Shamim
Saba Shamim
ARAbdul Rehman
Abdul Rehman
MQMahmood Hussain Qazi
Mahmood Hussain Qazi