Manuel Pastrana

Mr. Manuel Pastrana


Research Focus & Metrics

Academic Career Length

9Years (2018-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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5 June 2021 in Molecules
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Journal Article
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VLVanessa Loaiza-Cano
Vanessa Loaiza-Cano
LELaura Milena Monsalve Escudero
Laura Milena Monsalve Escudero
MPManuel Pastrana
Manuel Pastrana
DQDiana Carolina Quintero
Diana Carolina Quintero
SMSergio Andres Pulido Muñoz
Sergio Andres Pulido Muñoz
MMMarlen Martinez-Gutierrez
Marlen Martinez-Gutierrez
Despite the serious public health problem represented by the diseases caused by dengue (DENV), Zika (ZIKV) and chikungunya (CHIKV) viruses, there are still no specific licensed antivirals available for their treatment. Here, we examined the potential anti-arbovirus activity of ten di-halogenated compounds derived from L-tyrosine with modifications in amine and carboxyl groups. The activity of compounds on VERO cell line infection and the possible mechanism of action of the most promising compounds were evaluated. Finally, molecular docking between the compounds and viral and cellular proteins was evaluated in silico with Autodock Vina®, and the molecular dynamic with Gromacs®. Only two compounds (TDC-2M-ME and TDB-2M-ME) inhibited both ZIKV and CHIKV. Within the possible mechanism, in CHIKV, the two compounds decreased the number of genome copies and in the pre-treatment strategy the infectious viral particles. In the ZIKV model, only TDB-2M-ME inhibited the viral protein and demonstrate a virucidal effect. Moreover, in the U937 cell line infected with CHIKV, both compounds inhibited the viral protein and TDB-2M-ME inhibited the viral genome too. Finally, the in silico results showed a favorable binding energy between the compounds and the helicases of both viral models, the NSP3 of CHIKV and cellular proteins DDC and β2 adrenoreceptor.

17 April 2018 in Molecules
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CLCarlos López
Carlos López
MPManuel Pastrana
Manuel Pastrana
ARAlexandra Ríos
Alexandra Ríos
ACAlvaro Cogollo
Alvaro Cogollo
APAdriana Pabon
Adriana Pabon
A new alkaloid, Canthin-6-one, Huberine (1), together with three known compounds including 1-Hydroxy-canthin-6-one (2), Canthin-6-one (3) and stigma sterol (4), were isolated from the stem bark of Picrolemma huberi. The isolation was achieved by chromatographic techniques and the purification was performed on a C18 column using acetonitrile/water (90:10, v/v) with 0.1% formic acid as the mobile phase. The structural elucidation was performed via spectroscopic methods, notably 1D- and 2D-NMR, UV, IR, MS and HRMS. The antiplasmodial activity of the compounds was studied.

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MAMaria Suleny Serna Arbelaez
Maria Suleny Serna Arbelaez
VGValentina García-Cárcamo
Valentina García-Cárcamo
DTDaniel Santiago Rincón Tabares
Daniel Santiago Rincón Tabares
DGDiego Guerra
Diego Guerra
VLVanessa Loaiza-Cano
Vanessa Loaiza-Cano
Wildeman ZapataWildeman Zapata
Wildeman Zapata
HIV-1 infection is considered one of the major public health problems worldwide. Due to the limited access to antiretroviral therapy, the associated side effects, and the resistance that the virus can generate, it has become necessary to continue the development of new antiviral agents. The study aimed to identify potential antiviral agents for HIV-1 by evaluating the in vitro and in silico activity of 16 synthetic di-halogenated compounds derived from L-Tyrosine. The compounds were tested for cytotoxicity, which was determined using MTT, and a combined antiviral screening strategy (pre- and post-infection treatment) was performed against R5 and X4 strains of HIV-1. The most promising compounds were evaluated against a pseudotyped virus (HIV-GFP-VSV-G), and the effectiveness of these compounds was measured through GFP flow cytometry. Also, the antiviral effect of these compounds was evaluated in PBMCs using flow cytometry and ELISA for p24. The TODB-2M, TODC-2M, TODC-3M, and YDC-3M compounds showed low toxicity and significant inhibitory activity against HIV-1. In silico docking and molecular dynamics assays suggest that the compounds’ antiviral activity may be due to interaction with reverse transcriptase, viral protease, or envelope gp120.

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VLVanessa Loaiza-Cano
Vanessa Loaiza-Cano
EHEstiven Hernández
Estiven Hernández
MPManuel Pastrana
Manuel Pastrana
EJElkin Galeano Jaramillo
Elkin Galeano Jaramillo
DRDaniel Andes Pardo Rodriguez
Daniel Andes Pardo Rodriguez
MMMarlen Martinez-Gutierrez
Marlen Martinez-Gutierrez
Although the disease caused by chikungunya virus (CHIKV) is of great interest to public health organizations around the world, there are still no authorized antivirals for its treatment. Previously, dihalogenated anti-CHIKV compounds derived from L-tyrosine (dH-Y) were identified as being effective against in vitro infection by this virus, so the objective of this study was to determine the mechanisms of its antiviral action. Six dH-Y compounds (C1 to C6) dihalogenated with bromine or chlorine and modified in their amino groups were evaluated by different in vitro antiviral strategies and in silico tools. When the cells were exposed before infection, all compounds decreased the expression of viral proteins; only C4, C5 and C6 inhibited the genome; and C1, C2 and C3 inhibited infectious viral particles (IVPs). Furthermore, C1 and C3 reduce adhesion, while C2 and C3 reduce internalization, which could be related to the in silico interaction with the fusion peptide of the E1 viral protein. Only C3, C4, C5 and C6 inhibited IVPs when the cells were exposed after infection, and their effect occurred in late stages after viral translation and replication, such as assembly, and not during budding. In summary, the structural changes of these compounds determine their mechanism of action. Additionally, C3 was the only compound that inhibited CHIKV infection at different stages of the replicative cycle, making it a compound of interest for conversion as a potential drug.

22 March 2025 in Molecules
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PVPaula A. Velásquez-Bedoya
Paula A. Velásquez-Bedoya
MCMaria Isabel Zapata Cardona
Maria Isabel Zapata Cardona
LELaura Milena Monsalve Escudero
Laura Milena Monsalve Escudero
JPJaime Andrés Pereañez
Jaime Andrés Pereañez
DADiego Alexander Guerra Arias
Diego Alexander Guerra Arias
Wildeman ZapataWildeman Zapata
Wildeman Zapata
Introduction: Currently, there are no effective medications for treating all the clinical conditions of patients with COVID-19. We aimed to evaluate the antiviral activity of compounds derived from L-tyrosine against the B.1 lineage of SARS-CoV-2 in vitro and in silico. Methodology: The cytotoxicities of 15 halogenated compounds derived from L-tyrosine were evaluated in Vero-E6 cells by the MTT assay. The antiviral activity of the compounds was evaluated using four strategies, and viral quantification was performed by a plaque assay and qRT-PCR. The toxicity of the compounds was evaluated by ADMET predictor software. The affinity of these compounds for viral or cellular proteins and the stability of their conformations were determined by docking and molecular dynamics, respectively. Results: TODC-3M, TODI-2M, and YODC-3M reduced the viral titer >40% and inhibited the replication of viral RNA without significant cytotoxicity. In silico analyses revealed that these compounds presented low toxicity and binding energies between −4.3 and −5.2 Kcal/mol for three viral proteins (spike, Mpro, and RdRp). TODC-3M and YODC-3M presented the most stable conformations with the evaluated proteins. Conclusions: The most promising compounds were TODC-3M, TODI-2M, and YODC-3M, which presented low in vitro and in silico toxicity, antiviral potential through different strategies, and favorable affinities for viral targets. Therefore, they are candidates for in vivo studies.

1 January 2018 in Journal of the Brazilian Chemical Society
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Journal Article
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MPManuel Pastrana
Manuel Pastrana
EJElkin Jaramillo
Elkin Jaramillo
AMALEJANDRO MARTINEZ-MARTINEZ
ALEJANDRO MARTINEZ-MARTINEZ
AAAna Arango
Ana Arango
SRSara Restrepo
Sara Restrepo