The drilling of the Rio Tinto basement has provided evidence of an underground microbial community primarily sustained by the Fe and S metabolism through the biooxidation of pyrite orebodies. Although the gossan is the microbial activity product, which dates back to the Oligocene (25 Ma), no molecular evidence of such activity in the past has been reported yet. A Time of Flight Secondary Ion Mass Spectrometry (ToF-SIMS) molecular analysis of a subsurface sample in the Peña de Hierro basement has provided novel data of the ancient underground microbial community. It shows that the microbial remains are preserved in a mineral matrix composed of laminated Fe-oxysulfates and K- and Na-bearing sulfates alternating with secondary silica. In such a mineral substrate, the biomolecule traces are found in five different microstructure associations, (1) <15 micron-sized nodular microstructures composed of PO_n(2≤n≤4)⁻, (2) <30 micron-size micronodules containing fatty acids, acylglycerides, and alkanol chains, (3) 200-micron thick layer with N-bearing adducts, and sphingolipid and/or peptide traces. It suggests the mineralization of at least five microbial preserved entities with different metabolic capabilities, including: (1) Acidiphilium/Tessaracoccus-like phosphate mineralizers, (2) microbial patches preserving phosphate-free acylglycerides bacteria, (3) nitrogen oxidizing bacteria (e.g., Acidovorax sp.), (4) traces of heterotrophic ammonifying bacteria, and (5) sphingolipid bearing bacteria (e.g., Sphingomonadales, and δ-Proteobacteria) and/or mineralized biofilms. The primary biooxidation process acted as a preservation mechanism to release the inorganic ions that ultimately mineralized the microbial structures.

In the early Cambrian period, a severe greenhouse effect subjected the Gondwanan continents to accelerated erosion, enriching oceanic waters with essential nutrients, including phosphate, silicon, calcium, magnesium, iron, and trace elements. The nutrient flux, sourced from the volcanic composition of west Gondwana, was recorded as sequences of nodular phosphoritic limestones intercalated with chlorite-rich silts, containing ferrous phyllosilicates such as chamosite and chlorite. The abundant and diverse fossil record within these deposits corroborates that the ion supply facilitated robust biogeochemical and nutrient cycling, promoting elevated biological productivity and biodiversity. This paper investigates the early Cambrian nutrient fluxes from the Gondwanan continental region, focusing on the formation of phosphoritic and ferrous facies and the diversity of the fossil record. We estimate and model the biogeochemical cycling within a unique early Cambrian ecosystem located in South Spain, characterized by calcimicrobial reefs interspersed with archaeocyathids that settled atop a tectonically elevated volcano-sedimentary platform. The configuration enclosed a shallow marine lagoon nourished by riverine contributions including ferric and phosphatic complexes. Geochemical analyses revealed varying concentrations of iron (0.14–3.23 wt%), phosphate (0.1–20.0 wt%), and silica (0.27–69.0 wt%) across different facies, with distinct patterns between reef core and lagoonal deposits. Using the Geochemist’s Workbench software and field observations, we estimated that continental andesite weathering rates were approximately 23 times higher than the rates predicted through modeling, delivering, at least, annual fluxes of 0.286 g·cm⁻²·yr⁻¹ for Fe and 0.0146 g·cm⁻²·yr⁻¹ for PO₄³⁻ into the lagoon. The abundant and diverse fossil assemblage, comprising over 20 distinct taxonomic groups dominated by mollusks and small shelly fossils, indicates that this nutrient influx facilitated robust biogeochemical cycling and elevated biological productivity. A carbon budget analysis revealed that while the system produced an estimated 1.49·10¹⁵ g of C over its million-year existence, only about 0.01% was preserved in the rock record. Sulfate-reducing and iron-reducing chemoheterotrophic bacteria played essential roles in organic carbon recycling, with sulfate reduction serving as the dominant degradation pathway, processing approximately 1.55·10¹¹ g of C compared to the 5.94·10⁸ g of C through iron reduction. A stoichiometric analysis based on Redfield ratios suggested significant deviations in the C:P ratios between the different facies and metabolic pathways, ranging from 0.12 to 161.83, reflecting the complex patterns of organic matter preservation and degradation. The formation of phosphorites and ferrous phyllosilicates was primarily controlled by suboxic conditions in the lagoon, where microbial iron reduction destabilized Fe(III)-bearing oxyhydroxide complexes, releasing scavenged phosphate. This analysis of nutrient cycling in the Las Ermitas reef–lagoon system demonstrates how intensified continental weathering and enhanced nutrient fluxes during the early Cambrian created favorable conditions for the development of complex marine ecosystems. The quantified nutrient concentrations, weathering rates, and metabolic patterns established here provide a baseline data for future research addressing the biogeochemical conditions that facilitated the Cambrian explosion and offering new insights into the co-evolution of Earth’s geochemical cycles and early animal communities.

Understanding the mechanisms of protein preservation in extreme environments is essential for identifying potential molecular biosignatures on Mars. In this study, we investigated five sabkha sedimentary samples from the Abu Dhabi coast, spanning from the present day to ~11,000 years before present (BP), to assess how mineralogy and environmental conditions influence long-term protein stability. Using LC-MS/MS and direct Data-independent Acquisition (DIA) proteomic analysis, we identified 722 protein groups and 1300 peptides, revealing a strong correlation between preservation and matrix composition. Carbonate- and silica-rich samples favored the retention of DNA-binding and metal-coordinating proteins via mineral–protein interactions, while halite- and gypsum-dominated facies showed lower recovery due to extreme salinity and reduced biomass input. Functional profiling revealed a shift from metabolic dominance in modern samples to genome maintenance strategies in ancient ones, indicating microbial adaptation to prolonged environmental stress. Contrary to expectations, some ancient samples preserved large, multi-domain proteins, suggesting that early mineral encapsulation can stabilize structurally complex biomolecules over millennial timescales. Taxonomic reconstruction based on preserved proteins showed broad archaeal diversity, including Thaumarchaeota and thermophilic lineages, expanding our understanding of microbial ecology in hypersaline systems. These findings highlight sabkhas as valuable analogs for Martian evaporitic environments and suggest that carbonate–silica matrices on Mars may offer optimal conditions for preserving ancient molecular traces of life.

The process of soil genesis unfolds as pioneering microbial communities colonize mineral substrates, enriching them with biomolecules released from bedrock. The resultant intricate surface units emerge from a complex interplay among microbiota and plant communities. Under these conditions, host rocks undergo initial weathering through microbial activity, rendering them far from pristine and challenging the quest for biomarkers in ancient sedimentary rocks. In addressing this challenge, a comprehensive analysis utilizing Gas Chromatography Mass Spectrometry (GC-MS) and Time-of-Flight Secondary Ion Mass Spectrometry (ToF-SIMS) was conducted on a 520-Ma-old Cambrian rock. This investigation revealed a diverse molecular assemblage with comprising alkanols, sterols, fatty acids, glycerolipids, wax esters, and nitrogen-bearing compounds. Notably, elevated levels of bacterial C₁₆, C₁₈ and C₁₄ fatty acids, iso and anteiso methyl-branched fatty acids, as well as fungal sterols, long-chained fatty acids, and alcohols, consistently align with a consortium of bacteria and fungi accessing complex organic matter within a soil-type ecosystem. The prominence of bacterial and fungal lipids alongside maturity indicators denotes derivation from heterotrophic activity rather than ancient preservation or marine sources. Moreover, the identification of long-chain (>C22) n-alkanols, even-carbon-numbered long chain (>C20) fatty acids, and campesterol, as well as stigmastanol, provides confirmation of plant residue inputs. Furthermore, findings highlight the ability of contemporary soil microbiota to inhabit rocky substrates actively, requiring strict contamination controls when evaluating ancient molecular biosignatures or extraterrestrial materials collected.