Vera Zupunski

Dr. Vera Zupunski

orcid

Research Focus & Metrics

Academic Career Length

7Years (2020-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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14 April 2020 in Cells
Verified
Journal Article
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TLTeja Lavrin
Teja Lavrin
TKTilen Konte
Tilen Konte
RKRok Kostanjsek
Rok Kostanjsek
SSSimona Sitar
Simona Sitar
KSKristina Sepčić
Kristina Sepčić
Nina Gunde-cimermanNina Gunde-cimerman
Nina Gunde-cimerman
The neurotropic and extremophilic black yeast Exophiala dermatitidis (Herpotrichellaceae) inhabits diverse indoor environments, in particular bathrooms, steam baths, and dishwashers. Here, we show that the selected strain, EXF-10123, is polymorphic, can grow at 37 °C, is able to assimilate aromatic hydrocarbons (toluene, mineral oil, n-hexadecane), and shows abundant growth with selected neurotransmitters (acetylcholine, gamma-aminobutyric acid, glycine, glutamate, and dopamine) as sole carbon sources. We have for the first time demonstrated the effect of E. dermatitidis on neuroblastoma cell model SH-SY5Y. Aqueous and organic extracts of E. dermatitidis biomass reduced SH-SY5Y viability by 51% and 37%, respectively. Melanized extracellular vesicles (EVs) prepared from this strain reduced viability of the SH-SY5Y to 21%, while non-melanized EVs were considerably less neurotoxic (79% viability). We also demonstrated direct interactions of E. dermatitidis with SH-SY5Y by scanning electron and confocal fluorescence microscopy. The observed invasion and penetration of neuroblastoma cells by E. dermatitidis hyphae presumably causes the degradation of most neuroblastoma cells in only three days. This may represent a so far unknown indirect or direct cause for the development of some neurodegenerative diseases such as Alzheimer’s.

23 August 2021 in Antioxidants
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Journal Article
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VNValentina Novak
Valentina Novak
BRBoris Rogelj
Boris Rogelj
VZVera Zupunski
Vera Zupunski
Amyotrophic lateral sclerosis (ALS) and frontotemporal dementia (FTD) are severe neurodegenerative disorders that belong to a common disease spectrum. The molecular and cellular aetiology of the spectrum is a highly complex encompassing dysfunction in many processes, including mitochondrial dysfunction and oxidative stress. There is a paucity of treatment options aside from therapies with subtle effects on the post diagnostic lifespan and symptom management. This presents great interest and necessity for the discovery and development of new compounds and therapies with beneficial effects on the disease. Polyphenols are secondary metabolites found in plant-based foods and are well known for their antioxidant activity. Recent research suggests that they also have a diverse array of neuroprotective functions that could lead to better treatments for neurodegenerative diseases. We present an overview of the effects of various polyphenols in cell line and animal models of ALS/FTD. Furthermore, possible mechanisms behind actions of the most researched compounds (resveratrol, curcumin and green tea catechins) are discussed.

Verified
Journal Article
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BMBernarda Majc
Bernarda Majc
AHAnamarija Habič
Anamarija Habič
MNMetka Novak
Metka Novak
Ana RotterAna Rotter
Ana Rotter
APAndrej Porčnik
Andrej Porčnik
Barbara BreznikBarbara Breznik
Barbara Breznik
Glioblastoma (GBM) is the most common and deadly primary brain tumor in adults. Understanding GBM pathobiology and discovering novel therapeutic targets are critical to finding efficient treatments. Upregulation of the lysosomal cysteine carboxypeptidase cathepsin X has been linked to immune dysfunction and neurodegenerative diseases, but its role in cancer and particularly in GBM progression in patients is unknown. In this study, cathepsin X expression and activity were found to be upregulated in human GBM tissues compared to low-grade gliomas and nontumor brain tissues. Cathepsin X was localized in GBM cells as well as in tumor-associated macrophages and microglia. Subsequently, potent irreversible (AMS36) and reversible (Z7) selective cathepsin X inhibitors were tested in vitro. Selective cathepsin X inhibitors decreased the viability of patient-derived GBM cells as well as macrophages and microglia that were cultured in conditioned media of GBM cells. We next examined the expression pattern of neuron-specific enzyme γ-enolase, which is the target of cathepsin X. We found that there was a correlation between high proteolytic activity of cathepsin X and C-terminal cleavage of γ-enolase and that cathepsin X and γ-enolase were colocalized in GBM tissues, preferentially in GBM-associated macrophages and microglia. Taken together, our results on patient-derived material suggest that cathepsin X is involved in GBM progression and is a potential target for therapeutic approaches against GBM.

1 January 2025 in Nauplius
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Journal Article
Open access
NCNatasha Chipanovska
Natasha Chipanovska
VZVera Zupunski
Vera Zupunski
MVMiloš Vittori
Miloš Vittori
Lobed tegumental glands are found only in terrestrial isopods and are thought to have evolved in response to challenges associated with life on land. By examining 30 terrestrial isopod species, we aimed to determine the factors that influence the structure and distribution of the lobed glands. We discovered that lobed glands are found not only in the lateral plates and the uropods but also in the cephalothorax, the antennae, the tergites, and the pereopods of some species. The structure of the lobed glands is influenced by the phylogenetic position of an isopod. Namely, species of Diplocheta, Microcheta, and Synocheta have only one nucleus in the secretory cell, while two nuclei occur in the secretory cells of Crinocheta. By contrast, the distribution of the lobed glands in the body is influenced by the eco-morphotype of a species. Clingers and runners have numerous large lobed glands throughout the body. Creepers possess well-developed uropod glands, while lobed glands are absent or small and few in number in their pereon. Rollers have fewer lobed glands and some species apparently lack them. We also showed that several species possess several types of lobed glands. The correlation of lobed gland distribution with the eco-morphotype speaks in favor of the proposed defensive function of lobed glands.

Verified
Journal Article
Open access
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TKTinkara Korošec
Tinkara Korošec
BRBoris Rogelj
Boris Rogelj
VZVera Zupunski
Vera Zupunski
Amyotrophic lateral sclerosis (ALS) is a fatal neurodegenerative disease characterized by the progressive degeneration of upper and lower motor neurons. While monogenic causes account for a minority of cases, in most cases, ALS is sporadic and likely arises from multilayer interactions of genetic architecture, aging-associated loss of genome regulation, and inflammatory stress. Long interspersed nuclear element-1 (LINE-1) retrotransposons are endogenous mobile elements that are tightly controlled through various cellular mechanisms under normal conditions. When abnormally active, they are involved in gene inactivation, expression regulation, and genomic instability, leading to cellular processes such as innate immunity and cell death. Here, we present mechanistic links between LINE-1 and ALS. These include evidence that the burden of retrotransposition-competent LINE-1s (RC-L1s) is increased in ALS genomes, positioning RC-L1 load as a candidate contributor to missing heritability in sporadic disease. We also integrate emerging data showing that LINE-1 RNA can be intrinsically toxic independently of new insertions, as it promotes chromatin opening and transcriptional epigenetic noise, particularly when nuclear RNA surveillance pathways fail in TDP-43 pathology. Finally, we review how LINE-1-derived DNA/RNA intermediates can engage innate immune sensors, highlighting the cGAS–STING axis as a plausible route from LINE-1 de-repression to neuroinflammation. Together, these concepts support a model in which genetic RC-L1 load and age-/pathology-driven LINE-1 de-repression converge on nuclear dysfunction and inflammatory amplification, suggesting concrete molecular nodes for therapeutic intervention.