The anaerobic membrane bioreactors (AnMBR) with ring membrane module were operated under mesophilic temperature (M-AnMBR) and atmospheric temperature (A-AnMBR). Compared to the M-AnMBR, the removal efficiency of the A-AnMBR was found to be lower and the faster membrane fouling occurred in the A-AnMBR under corresponding hydraulic retention time (HRT). The MiSeq high-throughput sequencing was applied to analyze the microbial community structure. The HRT change had different effects on the community richness and diversity of the cake and bulk sludge. The abundance of phylum Proteobacteria in the M-AnMBR was higher than that in the A-AnMBR, which should account for the higher removal of nutrients in the M-AnMBR. The faster membrane fouling would occur in the A-AnMBR due to the relatively high abundance of Bacteroidetes in the bulk sludge and cake sludge. Moreover, specific comparison down to the genus level showed that the dominant abundant bacterial genera were Candidate division OP8 norank and Anaerolineaceae uncultured in the cake sludge for M-AnMBR, and were VadinHA17 norank, WCHB1-69 norank, VadinBC27 wastewater-sludge group, and Synergistaceae uncultured in the cake sludge for A-AnMBR The different representative genera with the variation of the HRTs for the two bioreactors might indicate the different performance between the two AnMBRs.

Perna viridisandP. canaliculusare economically and ecologically important species of shellfish. In this study, the complete ribosomal DNA (rDNA) unit sequences of these species were determined for the first time. The gene order, 18S rRNA–internal transcribed spacer (ITS) 1–5.8S rRNA–ITS2–28S rRNA–intergenic spacer (IGS), was similar to that observed in other eukaryotes. The lengths of theP. viridisandP. canaliculusrDNA sequences ranged from 8,432 to 8,616 bp and from 7,597 to 7,610 bp, respectively, this variability was mainly attributable to the IGS region. The putative transcription termination site and initiation site were confirmed.Perna viridisandP. canaliculusrDNA contained two (length: 93 and 40 bp) and one (length: 131 bp) repeat motifs, respectively. Individual intra-species differences mainly involved the copy number of repeat units. InP. viridis, three cytosine-guanine (CpG) sites with sizes of 440, 1,075 and 537 bp were found to cover nearly the entire IGS sequence, whereas inP. canaliculus, two CpG islands with sizes of 361 and 484 bp were identified. The phylogenetic trees constructed with maximum likelihood and neighbour-joining methods and based on ITS sequences were identical and included three major clusters. Species of the same genus were easily clustered together.

Ruditapes philippinarum and Mercenaria mercenaria are economically important bivalve species. The complete ribosomal DNA (rDNA) unit sequences of R. philippinarum and M. mercenaria, with as-sembled rDNA unit lengths of 12,910 and 12,100 bp, respectively, were obtained in this study for the first time. The rDNA unit structural organisation was similar to that in other eukaryotes, in-cluding the following elements in order: 18S rRNA-internal transcribed spacer 1 (ITS1); 5.8S rRNA-ITS2-28S rRNA-intergenic spacer (IGS) (3′ external transcribed spacer (ETS); non-transcribed spacer (NTS)-5′ ETS). The genetic differences between R. philippinarum and M. mercenaria were mainly attributable to non-coding regions (ITS1, ITS2 and IGS), especially the IGS region. The boundaries of putative 3′ ETS, NTS and 5′ ETS were confirmed. Seven and three sub-repeat fragments were found in R. philippinarum and M. mercenaria, respectively. These frag-ments ranged from 4 to 154 bp in length, and were located at the NTS and 5′ ETS regions. Five and six cytosine–guanine (CpG) islands were detected in R. philippinarum and M. mercenaria, respec-tively, and these covered 85.58% and 79.29% of the entire IGS sequence, respectively. The phylo-genetic tree was constructed based on Veneridae ITS and 18S rRNA sequences using the maxi-mum likelihood (ML) method. The ML tree based on ITS revealed that species within the same genus clearly clustered together with relatively high supporting values, and all the genera were recovered as monophyletic. The phylogenetic analyses using 18S rRNA provided a weaker phy-logenetic signal than ITS.