Water level fluctuations (WLFs) are an inherent feature of lake ecosystems and have been regarded as a pervasive pressure on lacustrine ecosystems globally due to anthropogenic activities and climate change. However, the impacts of WLFs on lake microbial communities is one of our knowledge gaps. Here, we used the high-throughput 16S rRNA gene sequencing approach to investigate the taxonomic and functional dynamics of bacterial communities in wet-season and dry-season of Poyang Lake (PYL) in China. The results showed that dry-season was enriched in total nitrogen (TN), nitrate (NO₃^-), ammonia (NH₄⁺), and soluble reactive phosphorus (SRP), while wet-season was enriched in dissolved organic carbon (DOC) and total phosphorus (TP). Bacterial communities were distinct taxonomically and functionally in dry-season and wet-season and the nutrients especially P variation had a significant contribution to the seasonal variation of bacterial communities. Moreover, bacterial communities responded differently to nutrient dynamics in different seasons. DOC, NO₃^-, and SRP had strong influences on bacterial communities in dry-season while only TP in wet-season. Alpha-diversity, functional redundancy, taxonomic dissimilarities, and taxa niche width were higher in dry-season, while functional dissimilarities were higher in wet-season, suggesting that the bacterial communities were more taxonomically sensitive in dry-season while more functionally sensitive in wet-season. Bacterial communities were more efficient in nutrients utilization in wet-season and might have different nitrogen removal mechanisms in different seasons. Bacterial communities in wet-season had significantly higher relative abundance of denitrification genes but lower anammox genes than in dry-season. This study enriched our knowledge of the impacts of WLFs and seasonal dynamics of lake ecosystems. Given the increasingly pervasive pressure of WLFs on lake ecosystems worldwide, our findings have important implications for conservation and management of lake ecosystems.

Lake and its inflow rivers compose a highly linked river-lake system, within which sediment and water are also closely connected. However, our understanding of this linked and interactive system remains unclear. In this study, we examined bacterial communities in the sediments and surface waters in Poyang Lake and its five tributaries. Bacterial communities were determined while using high-throughput 16S rRNA gene sequencing. The results showed significant differences of bacterial communities between sediments and surface waters, as well as between Poyang lake and its tributaries, suggesting that the river-lake system of Poyang Lake provides diverse and distinct habitats for bacterial communities, including lake water, lake sediment, river water, and river sediment. These biomes harbor distinct bacterial assemblages. Sediments harbor more diverse bacterial taxa than surface waters, but the bacterial communities in surface waters were more different across this river-lake system than those in sediments. In this eutrophic river-lake ecosystem, nitrogen and phosphorus were important drivers in sediment bacterial communities. Nitrogen, phosphorus, and dissolved organic carbon, as well as their stoichiometric ratios affected bacterial communities in surface waters. Moreover, network analysis revealed that the bacterial communities in surface waters were more vulnerable to various disturbances than in sediments, due to lower alpha diversity, high complexity of network, and a small number of key taxa (module hubs and connectors). Nutrient variables had strong influences on individual operational taxonomic units (OTUs) in the network, especially in bacterial network in surface waters. Different groups of taxa responded differently to nutrients, with some modules being more susceptible to nutrient variations. This study increased our current knowledge of linked river-lake ecosystems and provided valuable understanding for effective management and protection of these ecosystems by revealing bacterial communities in sediments and surface waters in Poyang Lake and its tributaries, as well as their responses to nutrients variation.

Nitrogen (N) and phosphorus (P) are key growth‐limiting nutrients for organisms and their absolute and relative supplies regulate the structure and function of ecosystems. Landcover changes lead to modifications of terrestrial biogeochemistry, consequently influencing aquatic nutrient conditions. This study sought to evaluate the potential impacts of grassland degradation on nutrient availability and nutrient limitation in the Qinghai Lake (China) and its inflow streams. We sampled nutrient concentrations and tested stream nutrient limitation by conducting nutrient diffusing substrata (NDS) bioassays in streams flowing through subbasins with different grassland status. To test nutrient limitation and the responses of lake phytoplankton to stream inflows, bioassays were conducted by adding different nutrients (N, P, and joint NP) as well as water from different streams to lake water with phytoplankton, respectively. In general, N concentrations as well as N:P ratios decreased while P concentrations increased with decreased normalized difference vegetation index (NDVI, an index of vegetation status), especially in September, suggesting that grassland degradation (low NDVI) has the potential to differentially decrease N availability and increase P availability in streams. Consistent with this, relative responses (RR) of stream periphyton to P and combined NP enrichments in the NDS bioassays decreased with stream P concentrations while increased with stream water N:P ratios. Lake phytoplankton responded strongly to P and combined NP addition indicating strong P‐limitation of lake phytoplankton. RR of lake phytoplankton to stream water decreased with nitrate concentration and N:P ratios in stream water and increased with the concentrations of ammonium, total phosphorus, and soluble reactive phosphorus, indicating that stream water with higher P but lower N and N:P from degraded subcatchments is associated with increased impact on P‐limited Lake phytoplankton. Overall, this study suggests that grassland degradation has the potential to differentially influence the nutrients delivered to streams with substantial increases in P but decreases in N and N:P, alleviating P limitation of stream periphyton and, ultimately, stimulating P‐limited phytoplankton growth in the lake.