Atsushi Toyoda

Dr. Atsushi Toyoda


Research Focus & Metrics

Academic Career Length

14Years (2013-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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6 June 2019 in Nature Medicine
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Journal Article
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SYShinichi Yachida
Shinichi Yachida
SMSayaka Mizutani
Sayaka Mizutani
HSHirotsugu Shiroma
Hirotsugu Shiroma
SSSatoshi Shiba
Satoshi Shiba
TNTakeshi Nakajima
Takeshi Nakajima
TYTakuji Yamada
Takuji Yamada

6 July 2018 in Science
Verified
Journal Article
Closed access
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HMHugh McColl
Hugh McColl
FRFernando Racimo
Fernando Racimo
LVLasse Vinner
Lasse Vinner
FDFabrice Demeter
Fabrice Demeter
TGTakashi Gakuhari
Takashi Gakuhari
EWEske Willerslev
Eske Willerslev
Ancient migrations in Southeast Asia: The past movements and peopling of Southeast Asia have been poorly represented in ancient DNA studies (see the Perspective by Bellwood). Lipson et al. generated sequences from people inhabiting Southeast Asia from about 1700 to 4100 years ago. Screening of more than a hundred individuals from five sites yielded ancient DNA from 18 individuals. Comparisons with present-day populations suggest two waves of mixing between resident populations. The first mix was between local hunter-gatherers and incoming farmers associated with the Neolithic spreading from South China. A second event resulted in an additional pulse of genetic material from China to Southeast Asia associated with a Bronze Age migration. McColl et al. sequenced 26 ancient genomes from Southeast Asia and Japan spanning from the late Neolithic to the Iron Age. They found that present-day populations are the result of mixing among four ancient populations, including multiple waves of genetic material from more northern East Asian populations. Science , this issue p. 92 , p. 88 ; see also p. 31

20 September 2016 in Nature Communications
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Journal Article
Open access
THTakuma Hashimoto
Takuma Hashimoto
DHDaiki D. Horikawa
Daiki D. Horikawa
YSYuki Saito
Yuki Saito
HKHirokazu Kuwahara
Hirokazu Kuwahara
HKHiroko Kozuka-Hata
Hiroko Kozuka-Hata
TKTakekazu Kunieda
Takekazu Kunieda
Tardigrades, also known as water bears, are small aquatic animals. Some tardigrade species tolerate almost complete dehydration and exhibit extraordinary tolerance to various physical extremes in the dehydrated state. Here we determine a high-quality genome sequence of Ramazzottius varieornatus, one of the most stress-tolerant tardigrade species. Precise gene repertoire analyses reveal the presence of a small proportion (1.2% or less) of putative foreign genes, loss of gene pathways that promote stress damage, expansion of gene families related to ameliorating damage, and evolution and high expression of novel tardigrade-unique proteins. Minor changes in the gene expression profiles during dehydration and rehydration suggest constitutive expression of tolerance-related genes. Using human cultured cells, we demonstrate that a tardigrade-unique DNA-associating protein suppresses X-ray-induced DNA damage by ∼40% and improves radiotolerance. These findings indicate the relevance of tardigrade-unique proteins to tolerability and tardigrades could be a bountiful source of new protection genes and mechanisms.

1 June 2019 in Science Advances
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ZCZelin Chen
Zelin Chen
YOYoshihiro Omori
Yoshihiro Omori
SKSergey Koren
Sergey Koren
TSTakuya Shirokiya
Takuya Shirokiya
TKTakuo Kuroda
Takuo Kuroda
Shawn Michael BurgessShawn Michael Burgess
Shawn Michael Burgess
A genomic assembly of the goldfish ( Carrassius auratus ) increases the utility of goldfish in research and agriculture.

8 July 2019 in Nature Plants
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Journal Article
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TKTomohiko Kazama
Tomohiko Kazama
MOMiki Okuno
Miki Okuno
YWYuta Watari
Yuta Watari
SYShungo Yanase
Shungo Yanase
CKChie Koizuka
Chie Koizuka
SAShin-ichi Arimura
Shin-ichi Arimura

31 May 2019 in Science
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Journal Article
Closed access
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AIAsano Ishikawa
Asano Ishikawa
NKNaoki Kabeya
Naoki Kabeya
KIKoki Ikeya
Koki Ikeya
RKRyo Kakioka
Ryo Kakioka
JCJennifer N. Cech
Jennifer N. Cech
JKJun Kitano
Jun Kitano
Well prepared: It is well known that species radiate into new niches by adapting to novel environments. But why do some species radiate in this way, while other, related, species do not. Ishikawa et al. looked across sticklebacks to determine why some, originally marine, lineages were able to colonize postglacial freshwater environments (see the Perspective by Weber and Tong). They found that a gene involved in fatty acid desaturation was duplicated in freshwater lineages. Transgenic manipulation of this gene allowed marine lineages to synthesize fatty acids and thus survive on fatty acid–deficient freshwater diets. Science , this issue p. 886 ; see also p. 831