Anton Kondratev

Dr. Anton Kondratev

orcid

Research Focus & Metrics

Academic Career Length

5Years (2022-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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4 May 2022 in Current Oncology
Verified
Journal Article
Open access
PDF file
IHIlkka Haapala
Ilkka Haapala
AKAnton Kondratev
Anton Kondratev
ARAntti Roine
Antti Roine
MMMeri Mäkelä
Meri Mäkelä
AKAnton Kontunen
Anton Kontunen
JHJoonas Haapasalo
Joonas Haapasalo
Isocitrate dehydrogenase (IDH) mutation status is an important factor for surgical decision-making: patients with IDH-mutated tumors are more likely to have a good long-term prognosis, and thus favor aggressive resection with more survival benefit to gain. Patients with IDH wild-type tumors have generally poorer prognosis and, therefore, conservative resection to avoid neurological deficit is favored. Current histopathological analysis with frozen sections is unable to identify IDH mutation status intraoperatively, and more advanced methods are therefore needed. We examined a novel method suitable for intraoperative IDH mutation identification that is based on the differential mobility spectrometry (DMS) analysis of the tumor. We prospectively obtained tumor samples from 22 patients, including 11 IDH-mutated and 11 IDH wild-type tumors. The tumors were cut in 88 smaller specimens that were analyzed with DMS. With a linear discriminant analysis (LDA) algorithm, the DMS was able to classify tumor samples with 86% classification accuracy, 86% sensitivity, and 85% specificity. Our results show that DMS is able to differentiate IDH-mutated and IDH wild-type tumors with good accuracy in a setting suitable for intraoperative use, which makes it a promising novel solution for neurosurgical practice.

16 April 2022 in Array
Verified
Journal Article
Open access
AKAnton Kondratev
Anton Kondratev
KSKatri Salminen
Katri Salminen
JRJussi Rantala
Jussi Rantala
TSTimo Salpavaara
Timo Salpavaara
JVJarmo Verho
Jarmo Verho
PMPhilipp Müller
Philipp Müller

2 September 2024 in IEEE Access
Verified
Journal Article
Open access
AKAnton Kondratev
Anton Kondratev
ARAngelo Robiños
Angelo Robiños
OAOsmo Anttalainen
Osmo Anttalainen
TSTimo Salpavaara
Timo Salpavaara
JRJussi Rantala
Jussi Rantala
PMPhilipp Müller
Philipp Müller
Classification of volatile organic compounds (VOCs) is of interest in many fields. Examples include but are not limited to medicine, detection of explosives, and food quality control. Measurements collected with so-called electronic noses can be used for classification and analysis of VOCs. One type of electronic noses that has seen considerable development in recent years is Differential Mobility Spectrometry (DMS). DMS yields measurements that are visualized as dispersion plots that contain traces, also known as alpha curves. Current methods used for analyzing DMS dispersion plots do not usually utilize the information stored in the continuity of these traces, which suggests that alternative approaches should be investigated. In this work, for the first time, dispersion plots were interpreted as a series of measurements evolving sequentially. Thus, it was hypothesized that time-series classification algorithms can be effective for classification and analysis of dispersion plots. An extensive dataset of 900 dispersion plots for five chemicals measured at five flow rates and two concentrations was collected. The data was used to analyze the classification performance of six algorithms. The highest classification accuracy of 88% was achieved by a Long-Short Term Memory neural network, which supports the hypothesis that interpreting DMS measurements as sequential data is beneficial and outperformed classification algorithms traditionally used for DMS-based VOC identification.

29 May 2022
Verified
Conference Paper
Closed access
AKAnton Kondratev
Anton Kondratev
OAOsmo Anttalainen
Osmo Anttalainen
JRJussi Rantala
Jussi Rantala
VSVeikko Surakka
Veikko Surakka
AVAntti Vehkaoja
Antti Vehkaoja
AKAnton Kondratev
Anton Kondratev
Volatile organic compounds (VOC) can be analyzed and classified based on dispersion plots yielded by Differential Mobility Spectrometry (DMS). These dispersion plots contain traces, also known as alpha curves that indicate the presence of VOCs with specific charge and cross-sectional area. However, often the dispersion plots are analyzed without utilizing this information but rather using the pixel values independently or analyzing values at a specific high electric field level. This paper proposes a technique for extracting and clustering alpha curves from dispersion plots. The cluster information could then be used inside existing detection and classification algorithms to potentially improve their accuracy.

27 September 2024 in PLOS ONE
Verified
Journal Article
Open access
PDF file
PMPhilipp Müller
Philipp Müller
KPKhoa Pham-Dinh
Khoa Pham-Dinh
HTHuy Trinh
Huy Trinh
AKAnton Kondratev
Anton Kondratev
NCNeil J. Cronin
Neil J. Cronin
Oxygen consumption ( V ˙ O 2 ) is an important measure for exercise test, such as walking and running, that can be measured outdoors using portable spirometers or metabolic analyzers. However, these devices are not feasible for regular use by consumers as they intervene with the user’s physical integrity, and are expensive and difficult to operate. To circumvent these drawbacks, indirect estimation of V ˙ O 2 using neural networks combined with motion features and heart rate measurements collected with consumer-grade sensors has been shown to yield reasonably accurate V ˙ O 2 for intra-subject estimation. However, estimating V ˙ O 2 with neural networks trained with data from other individuals than the user, known as inter-subject estimation, remains an open problem. In this paper, five types of neural network architectures were tested in various configurations for inter-subject V ˙ O 2 estimation. To analyse predictive performance, data from 16 participants walking and running at speeds between 1.0 m/s and 3.3 m/s were used. The most promising approach was Xception network, which yielded average estimation errors as low as 2.43 ml×min−1×kg−1, suggesting that it could be used by athletes and running enthusiasts for monitoring their oxygen consumption over time to detect changes in their movement economy.

28 April 2024 in bioRxiv
Verified
Preprint
Open access
PDF file
PMPhilipp Müller
Philipp Müller
KPKhoa Pham-Dinh
Khoa Pham-Dinh
HTHuy Trinh
Huy Trinh
AKAnton Kondratev
Anton Kondratev
NCNeil J. Cronin
Neil J. Cronin
Oxygen consumption is an important parameter for exercise test, such as walking and running, that can be measured using portable spirometers or metabolic analyzers. However, these devices are not feasible for regular use by consumers as they intervene with the user’s physical integrity, and are expensive and difficult to operate. To circumvent these drawbacks, indirect estimation of using neural networks combined with motion parameters and heart rate measurements collected with consumer-grade sensors has been shown to yield reasonably accurate for intra-subject estimation. However, estimating with neural networks trained with data from other individuals than the user, known as inter-subject estimation, remains an open problem. In this paper, five types of neural network were tested in various configurations for inter-subject estimation. To analyse predictive performance, data from 16 participants walking and running at speeds between 1.0 m/s and 3.3 m/s were used. The most promising approach was XceptionNet, which in most configurations even yielded a lower average estimation error than the LSTM neural network from an earlier study for intra-subject estimation. This suggests that XceptionNet could be embedded in portable devices for real-time estimation of oxygen consumption during walking and running.