Non-destructive plant stress phenotyping begins with traditional one-dimensional (1D) spectroscopy, followed by two-dimensional (2D) imaging, three-dimensional (3D) or even temporal-three-dimensional (T-3D), spectral-three-dimensional (S-3D), and temporal-spectral-three-dimensional (TS-3D) phenotyping, all of which are aimed at observing subtle changes in plants under stress. However, a comprehensive review that covers all these dimensional types of phenotyping, ordered in a spatial arrangement from 1D to 3D, as well as temporal and spectral dimensions, is lacking. In this review, we look back to the development of data-acquiring techniques for various dimensions of plant stress phenotyping (1D spectroscopy, 2D imaging, 3D phenotyping), as well as their corresponding data-analyzing pipelines (mathematical analysis, machine learning, or deep learning), and look forward to the trends and challenges of high-performance multi-dimension (integrated spatial, temporal, and spectral) phenotyping demands. We hope this article can serve as a reference for implementing various dimensions of non-destructive plant stress phenotyping.

Tea polyphenol and epigallocatechin gallate (EGCG) were considered as key components of tea. The rapid prediction of these two components can be beneficial for tea quality control and product development for tea producers, breeders and consumers. This study aimed to develop reliable models for tea polyphenols and EGCG content prediction during the breeding process using Fourier Transform–near infrared (FT-NIR) spectroscopy combined with machine learning algorithms. Various spectral preprocessing methods including Savitzky–Golay smoothing (SG), standard normal variate (SNV), vector normalization (VN), multiplicative scatter correction (MSC) and first derivative (FD) were applied to improve the quality of the collected spectra. Partial least squares regression (PLSR) and least squares support vector regression (LS-SVR) were introduced to establish models for tea polyphenol and EGCG content prediction based on different preprocessed spectral data. Variable selection algorithms, including competitive adaptive reweighted sampling (CARS) and random forest (RF), were further utilized to identify key spectral bands to improve the efficiency of the models. The results demonstrate that the optimal model for tea polyphenols calibration was the LS-SVR with R_p = 0.975 and RPD = 4.540 based on SG-smoothed full spectra. For EGCG detection, the best model was the LS-SVR with R_p = 0.936 and RPD = 2.841 using full original spectra as model inputs. The application of variable selection algorithms further improved the predictive performance of the models. The LS-SVR model for tea polyphenols prediction with R_p = 0.978 and RPD = 4.833 used 30 CARS-selected variables, while the LS-SVR model build on 27 RF-selected variables achieved the best predictive ability with R_p = 0.944 and RPD = 3.049, respectively, for EGCG prediction. The results demonstrate a potential of FT-NIR spectroscopy combined with machine learning for the rapid screening of genotypes with high tea polyphenol and EGCG content in tea leaves.

The purpose of this study was to establish an extraction method for the kinsenoside compound from the whole plant Anoectochilus roxburghii. Ultrasound assisted extraction (UAE) and Ultra-high performance liquid chromatography (UPLC) method were used to extract and determine the content of kinsenoside, while response surface method (RSM) was used to optimize the extraction process. The best possible range for methanol concentration (0–100%), the liquid-solid ratio (5:1–30:1 mL/g), ultrasonic power (240–540 W), duration of ultrasound (10–50 min), ultrasonic temperature (10–60 °C), and the number of extractions (1–4) were obtained according to the single factor experiments. Then, using the Box-Behnken design (BBD) of response surface analysis, the optimum extraction conditions were obtained with 16.33% methanol concentration, the liquid-solid ratio of 10.83:1 mL/g and 35.00 °C ultrasonic temperature. Under these conditions, kinsenoside extraction yield reached 32.24% dry weight. The best conditions were applied to determine the kinsenoside content in seven different cultivation ages in Anoectochilus roxburghii.

Tea polyphenols are considered as an important indicator of tea quality. Rapid detection of tea polyphenol content plays a valuable role for tea breeding and quality inspection during tea production. In this work, a portable rapid non-destructive detection device of tea polyphenols in fresh tea leaves was developed, which integrated the fusion technology of visible/short-wave (400–1050 nm) and long-wave (1000–1650 nm) near-infrared spectroscopy (Vis/NIR). Experimental results indicated that the spectra within the overlapping region (1000–1050 nm) were assembled by applying the spectral data fusing method. Followed by spectral data preprocessing with the Savitzky–Golay smoothing (SG) method, least squares support vector regression (LS–SVR) models were established for detecting the tea polyphenol content of fresh tea leaves. Based on the fused Vis/NIR spectra (dual-band), the correlation coefficient of calibration (R_C), root mean square error of calibration (RMSEC), correlation coefficient of prediction (R_P), root mean square error of prediction (RMSEP), and residual predictive deviation (RPD) reached 0.976, 0.679%, 0.893, 0.897%, and 2.230, respectively, which were better than the visible/short-wave or long-wave near infrared spectral data (single-band). The sensitive spectral wavebands of tea polyphenols extracted using the random frog (RF) algorithm were distributed in 402–448 nm, 555–600 nm, 810–1042 nm, 1056–1103 nm, 1219–1323 nm, 1406–1416 nm, and 1499–1511 nm. This demonstrated that the prediction of tea polyphenol content using fused spectral data combined with the LS–SVR model depended on various functional groups such as auxochromes, chromogenic groups, and hydrogen-containing groups. The proposed device is capable of non-destructive detection of tea polyphenol content in fresh tea leaves, which can provide effective technical support for tea breeding and tea leaf quality control.

Background: Rice blast is one of the most destructive diseases in rice cultivation, significantly threatening global food security. Timely and precise detection of rice panicle blast is crucial for effective disease management and prevention of crop losses. This study introduces ConvGAM, a novel semantic segmentation model leveraging the ConvNeXt-Large backbone network and the Global Attention Mechanism (GAM). This design aims to enhance feature extraction and focus on critical image regions, addressing the challenges of detecting small and complex disease patterns in UAV-captured imagery. Furthermore, the model incorporates advanced loss functions to handle data imbalances effectively, supporting accurate classification across diverse disease severities. Results: The ConvGAM model, leveraging the ConvNeXt-Large backbone network and the Global Attention Mechanism (GAM), achieves outstanding performance in feature extraction, crucial for detecting small and complex disease patterns. Quantitative evaluation demonstrates that the model achieves an overall accuracy of 91.4%, a mean IoU of 79%, and an F1 score of 82% on the test set. The incorporation of Focal Tversky Loss further enhances the model's ability to handle imbalanced datasets, improving detection accuracy for rare and severe disease categories. Correlation coefficient analysis across disease severity levels indicates high consistency between predictions and ground truth, with values ranging from 0.962 to 0.993. These results confirm the model’s reliability and robustness, highlighting its effectiveness in rice panicle blast detection under challenging conditions. Conclusion: The ConvGAM model demonstrates strong qualitative advantages in detecting rice panicle blast disease. By integrating advanced feature extraction with the ConvNeXt-Large backbone and GAM, the model achieves precise detection and classification across varying disease severities. The use of Focal Tversky Loss ensures robustness against dataset imbalances, enabling accurate identification of rare disease categories. Despite these strengths, future efforts should focus on improving classification accuracy and adapting the model to diverse environmental conditions. Additionally, optimizing model parameters and exploring advanced data augmentation techniques could further enhance its detection capabilities and expand its applicability to broader agricultural scenarios.