Muhammad Ali Ali

Mr. Muhammad Ali Ali

orcid

Research Focus & Metrics

Academic Career Length

6Years (2021-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
11 October 2021 in Forests
Verified
Journal Article
Open access
PDF file
HLHanxue Liang
Hanxue Liang
SJShaowei Jiang
Shaowei Jiang
MAMuhammad Ali Ali
Muhammad Ali Ali
JKJian Kang
Jian Kang
HZHuoxing Zhu
Huoxing Zhu
JHJianguo Huang
Jianguo Huang
As an important barrier against desert invasion in Northwest China, Helan Mountains (HL), Luoshan Mountains (LS) and their natural forests have an extremely important ecological status. It is of great significance to study the relationship between forest growth and climate in this region under the background of global change. At present, relevant research mostly focuses on the Chinese pine (Pinus tabulaeformis Carr.), and little is known about how Qinghai spruce (Picea crassifolia Kom.) responds to climate change. To investigate the potential relationships between radial growth of P. crassifolia and climatic conditions in Ningxia, China, we collected tree-ring samples from P. crassifolia growing in the HL and LS and then established the standard tree-ring width chronologies for the two sites. Correlation analysis together with multivariate linear regression and relative contribution analyses were used, and results showed that radial growth in the HL was determined by the precipitation in the previous September, by the standardized evapotranspiration index (SPEI) in the current March and June, and by the maximum air temperature in the current September. The maximum air temperature in the current September contributed the most (0.348) to the radial growth in the HL. In the LS, radial growth was determined by the precipitation in the previous September and in the current March and by the minimum air temperature in the current July. The factor that made the most contribution was the precipitation in the current March (0.489). Our results suggested that in the wetting and warming future, growth of P. crassifolia in the HL will increase while that in the LS needs further investigation. Our results also provide a basis for predicting how P. crassifolia in northwest China will grow under the background of future climate change and provide a reference for formulating relevant management measures to achieve ecological protection and sustainable development policies.

10 August 2026 in BMC Bioinformatics
Verified
Journal Article
Open access
PDF file
JFJulian Frey
Julian Frey
Zoe SchindlerZoe Schindler
Zoe Schindler
MAMuhammad Ali Ali
Muhammad Ali Ali
JBJoshua Braun-Wimmer
Joshua Braun-Wimmer
KGKilian Gerberding
Kilian Gerberding
TSThomas Seifert
Thomas Seifert
Background: Standardisation, accessibility, and reproducibility remain persistent challenges in data‑intensive scientific research. The Galaxy platform addresses these issues by providing a web-based environment for executing, sharing, and publishing computational workflows, yet programmatic access has been largely centred on the Python ecosystem through BioBlend. Methods: Here, we introduce GalaxyR, a native R package that provides a comprehensive and structured interface to the Galaxy application programming interface. GalaxyR enables users to manage histories, upload and retrieve data, execute tools and workflows, monitor jobs, and inspect results directly from within the R environment. By integrating Galaxy’s scalable computational infrastructure with R’s widely adopted data analysis ecosystem, GalaxyR facilitates automated, reproducible, and resource‑efficient workflows without requiring local high‑performance computing resources. The package supports both HTTPS‑ and FTP‑based data transfer, robust history and dataset management, and programmatic workflow orchestration across Galaxy instances. Results: An application example demonstrates the use of GalaxyR for large-scale processing of drone-based laser scanning data, where computationally intensive tree‑level segmentation was delegated to the Galaxy infrastructure, while workflow control and preprocessing were handled in R within a few lines of code. Conclusions: GalaxyR thus bridges a critical gap for R users, significantly expanding access to Galaxy‑based analyses and enabling scalable, reproducible research across bioinformatics, ecology, remote sensing, and related data-driven disciplines.