Apple leaf spot caused by the Alternaria alternata f. sp. mali (ALT1) fungus is one of the most devastating diseases of apple (Malus × domestica). We identified a hairpin RNA (hpRNA) named MdhpRNA277 that produces small RNAs and is induced by ALT1 infection in 9Golden Delicious9 apple. MdhpRNA277 produces mdm-siR277-1 and mdm-siR277-2, which target five resistance (R) genes that are expressed at high levels in resistant apple variety 9Hanfu9 and at low levels in susceptible variety 9Golden Delicious9 following ALT1 infection. MdhpRNA277 was strongly induced in 9Golden Delicious9 but not 9Hanfu9 following ALT1 inoculation. MdhpRNA277 promoter activity was much stronger in inoculated 9Golden Delicious9 vs. 9Hanfu9. We identified a single nucleotide polymorphism (SNP) in the MdhpRNA277 promoter region between 9Golden Delicious9 (pMdhpRNA277-GD) and 9Hanfu9 (pMdhpRNA277-HF). The transcription factor MdWHy binds to pMdhpRNA277-GD, but not to pMdhpRNA277-HF. Transgenic 9GL-39 apple expressing pMdhpRNA277-GD:MdhpRNA277 was more susceptible to ALT1 infection than plants expressing pMdhpRNA277-HF:MdhpRNA277 due to induced mdm-siR277 accumulation and reduced expression of the five target R genes. We confirmed that the SNP in pMdhpRNA277 is associated with Alternaria leaf spot resistance by crossing. This SNP could be used as a marker to distinguish between apple varieties that are resistant or susceptible to Alternaria leaf spot.

The gibberellins (GAs) receptor GA INSENSITIVE DWARF1 (GID1) plays a central role in GA signal perception and transduction. The typical photoperiodic plant chrysanthemum (Chrysanthemum morifolium) only flowers when grown in short-day photoperiods. In addition, chrysanthemum flowering is also controlled by the aging pathway, but whether and how GAs participate in photoperiod- and age-dependent regulation of flowering remain unknown. Here, we demonstrate that photoperiod affects CmGID1B expression in response to GAs and developmental age. Moreover, we identified PHOTOLYASE/BLUE LIGHT RECEPTOR2, an atypical photocleavage synthase, as a CRYPTOCHROME-INTERACTING bHLH1 interactor with which it forms a complex in response to short days to activate CmGID1B transcription. Knocking down CmGID1B raised endogenous bioactive GA contents and GA signal perception, in turn modulating the expression of the aging-related genes MicroRNA156 and SQUAMOSA PROMOTER BINDING PROTEIN-LIKE3. We propose that exposure to short days accelerates the juvenile-to-adult transition by increasing endogenous GA contents and response to GAs, leading to entry into floral transformation.

Chrysanthemum is one of the four major cut flowers in the world, with high ornamental and economic value. Fragrance is an important ornamental character of chrysanthemum flowers, especially those consumed as tea and other foods, and the flower fragrance is the major determinant of the commercial value of chrysanthemum cultivars. Currently, however, the research on chrysanthemum flower fragrance is mainly focused on the composition and content of fragrant compounds, and a clear classification of fragrance types is lacking. Here, we divided chrysanthemum fragrance into six categories based on sensory evaluation and determined the identity and content of fragrant compounds of chrysanthemum accessions representative of each fragrance type by GC-MS. In addition, we analyzed the conserved aromatic substances responsible for the fruity fragrance type chrysanthemum with multi-functional development potential, providing a theoretical basis for creating new chrysanthemum germplasm with specific fragrance types. The results of this study can accelerate the breeding process of chrysanthemum accessions with new fragrance types.