Ceyhun Ekrem Kirimli

Prof. Ceyhun Ekrem Kirimli

orcid

Research Focus & Metrics

Academic Career Length

19Years (2008-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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23 April 2014 in The Analyst
Verified
Journal Article
Closed access
PDF file
CKCeyhun Ekrem Kirimli
Ceyhun Ekrem Kirimli
WSWei-Heng Shih
Wei-Heng Shih
WSWan Y. Shih
Wan Y. Shih
We have examined real-time, in situ hybridization detection of target DNA (tDNA) in a buffer solution and in urine using 8 μm-thick lead magnesium niobate–lead titanate (PMN–PT) piezoelectric plate sensors (PEPSs) about 1.1–1.2 mm long and 0.45 mm wide with improved 3-mercaptopropyltrimethoxysilane (MPS) insulation and a new multiple-parabola (>50) resonance peak position fitting algorithm. With probe DNA (pDNA) immobilized on the PEPS surface and by monitoring the first width extension mode (WEM) resonance frequency shift we detected tDNA in real time at concentration as low as 1 × 10−19 M in urine (100 zM) with a signal to noise ratio (SNR) of 13 without DNA isolation and amplification at room temperature in 30 min. The present multiple-parabola fitting algorithm increased the detection of SNR by about 10 times compared to those obtained using the raw data and by about 5 times compared to those obtained using single parabola fitting. The detection was validated by in situ follow-up detection and subsequent visualization of fluorescent reporter microspheres (FRMs) coated with reporter DNA complementary to the tDNA but different from the probe pDNA.

1 May 2013 in Biosensors and Bioelectronics
Verified
Journal Article
Closed access
WWWei Wu
Wei Wu
CKCeyhun Ekrem Kirimli
Ceyhun Ekrem Kirimli
WSWei-Heng Shih
Wei-Heng Shih
WSWan Y. Shih
Wan Y. Shih

22 February 2023 in Biomimetics
Verified
Journal Article
Open access
PDF file
ABAliye Bulut
Aliye Bulut
BTBetul Z. Temur
Betul Z. Temur
CKCeyhun Ekrem Kirimli
Ceyhun Ekrem Kirimli
OGOzgul Gok
Ozgul Gok
BBBertan K. Balcioglu
Bertan K. Balcioglu
OCOzge Can
Ozge Can
The need for rapidly developed diagnostic tests has gained significant attention after the recent pandemic. Production of neutralizing antibodies for vaccine development or antibodies to be used in diagnostic tests usually require the usage of recombinant proteins representing the infectious agent. However, peptides that can mimic these recombinant proteins may be rapidly utilized, especially in emergencies such as the recent outbreak. Here, we report two peptides that mimic the receptor binding domain of the spike protein of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) and investigate their binding behavior against the corresponding human immunoglobulin G and immunoglobulin M (IgG and IgM) antibodies in a clinical sample using a quartz crystal microbalance (QCM) sensor. These peptides were immobilized on a QCM sensor surface, and their binding behavior was studied against a clinical serum sample that was previously determined to be IgG and IgM-positive. It was determined that designed peptides bind to SARS-CoV-2 antibodies in a clinical sample. These peptides might be useful for the detection of SARS-CoV-2 antibodies using different methods such as enzyme-linked immunosorbent assay (ELISA) or lateral flow assays. A similar platform might prove to be useful for the detection and development of antibodies in other infections.

1 April 2019 in Biosensors and Bioelectronics
Verified
Journal Article
Closed access
SHSong Han
Song Han
MSMehmet Çağrı Soylu
Mehmet Çağrı Soylu
CKCeyhun Ekrem Kirimli
Ceyhun Ekrem Kirimli
WWWei Wu
Wei Wu
BSBhaswati Sen
Bhaswati Sen
WSWan Y. Shih
Wan Y. Shih

5 January 2015 in The Analyst
Verified
Journal Article
Closed access
PDF file
CKCeyhun Ekrem Kirimli
Ceyhun Ekrem Kirimli
WSWei-Heng Shih
Wei-Heng Shih
WSWan Y. Shih
Wan Y. Shih
We have examinedin situdetection of hepatitis B virus 1762T/1764A double mutation (HBVDM) in urine using a (Pb(Mg1/3Nb2/3)O3)0.65(PbTiO3)0.35(PMN-PT) piezoelectric plate sensor (PEPS) coated with a 16-nucleotide (nt) probe DNA (pDNA) complementary to the HBVDM.

12 February 2022 in Biosensors and Bioelectronics: X
Verified
Journal Article
Open access
CKCeyhun Ekrem Kirimli
Ceyhun Ekrem Kirimli
Elcim ElgunElcim Elgun
Elcim Elgun
UUUtku Unal
Utku Unal