Karl-Henrik Larsson

Prof. Karl-Henrik Larsson

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Research Focus & Metrics

Academic Career Length

17Years (2010-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 September 2017 in Fungal Biology
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Journal Article
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AJAlfredo Justo
Alfredo Justo
OMOtto Miettinen
Otto Miettinen
DFDimitrios Floudas
Dimitrios Floudas
BOBeatriz Ortiz-Santana
Beatriz Ortiz-Santana
ESElisabet Sjökvist
Elisabet Sjökvist
DHDavid S. Hibbett
David S. Hibbett

30 November 2020 in Microorganisms
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Journal Article
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UKUrmas Koljalg
Urmas Koljalg
HNHenrik Nilsson
Henrik Nilsson
DSDmitry Schigel
Dmitry Schigel
LTLeho Tedersoo
Leho Tedersoo
KLKarl-Henrik Larsson
Karl-Henrik Larsson
KAKessy Abarenkov
Kessy Abarenkov
Here, we describe the taxon hypothesis (TH) paradigm, which covers the construction, identification, and communication of taxa as datasets. Defining taxa as datasets of individuals and their traits will make taxon identification and most importantly communication of taxa precise and reproducible. This will allow datasets with standardized and atomized traits to be used digitally in identification pipelines and communicated through persistent identifiers. Such datasets are particularly useful in the context of formally undescribed or even physically undiscovered species if data such as sequences from samples of environmental DNA (eDNA) are available. Implementing the TH paradigm will to some extent remove the impediment to hastily discover and formally describe all extant species in that the TH paradigm allows discovery and communication of new species and other taxa also in the absence of formal descriptions. The TH datasets can be connected to a taxonomic backbone providing access to the vast information associated with the tree of life. In parallel to the description of the TH paradigm, we demonstrate how it is implemented in the UNITE digital taxon communication system. UNITE TH datasets include rich data on individuals and their rDNA ITS sequences. These datasets are equipped with digital object identifiers (DOI) that serve to fix their identity in our communication. All datasets are also connected to a GBIF taxonomic backbone. Researchers processing their eDNA samples using UNITE datasets will, thus, be able to publish their findings as taxon occurrences in the GBIF data portal. UNITE species hypothesis (species level THs) datasets are increasingly utilized in taxon identification pipelines and even formally undescribed species can be identified and communicated by using UNITE. The TH paradigm seeks to achieve unambiguous, unique, and traceable communication of taxa and their properties at any level of the tree of life. It offers a rapid way to discover and communicate undescribed species in identification pipelines and data portals before they are lost to the sixth mass extinction.

20 June 2010 in Mycological Progress
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Journal Article
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OMOtto Miettinen
Otto Miettinen
KLKarl-Henrik Larsson
Karl-Henrik Larsson

23 October 2018 in MycoKeys
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Journal Article
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IVIlya Viner
Ilya Viner
VSViacheslav Spirin
Viacheslav Spirin
LZLucie Zíbarová
Lucie Zíbarová
KLKarl-Henrik Larsson
Karl-Henrik Larsson
Lagarobasidium is a small genus of wood-decaying basidiomycetes in the order Hymenochaetales. Molecular phylogenetic analyses have either supported Lagarobasidium as a distinct taxon or indicated that it should be subsumed under Xylodon , a genus that covers the majority of species formerly placed in Hyphodontia . We used sequences from the ITS and nuclear LSU regions to infer the phylogenetic position of the type species L.detriticum . Analyses confirm Lagarobasidium as a synonym of Xylodon . Molecular and morphological information show that the traditional concept of L.detriticum covers at least two species, Xylodondetriticus from Europe and X.pruinosus with known distribution in Europe and North America. Three species currently placed in Lagarobasidium are transferred to Xylodon , viz. X.magnificus , X.pumilius and X.rickii . Three new Xylodon species are described and illustrated, X.ussuriensis and X.crystalliger from East Asia and X.attenuatus from the Pacific Northwest America. The identity of X.nongravis , described from Sri Lanka, is discussed.

1 February 2021 in Mycological Progress
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AMAngelina de Meiras-Ottoni
Angelina de Meiras-Ottoni
KLKarl-Henrik Larsson
Karl-Henrik Larsson
TGTatiana Baptista Gibertoni
Tatiana Baptista Gibertoni

1 March 2021 in Fungal Biology
Verified
Journal Article
Open access
BSBobby Prabowo Sulistyo
Bobby Prabowo Sulistyo
KLKarl-Henrik Larsson
Karl-Henrik Larsson
DHDanny Haelewaters
Danny Haelewaters
MRMartin Ryberg
Martin Ryberg
Atheliales (Agaricomycetes, Basidiomycota) is an order mostly composed of corticioid fungi, containing roughly 100 described species in 20 genera. Members exhibit remarkable ecological diversity, including saprotrophs, ectomycorrhizal symbionts, facultative parasites of plants or lichens, and symbionts of termites. Ectomycorrhizal members are well known because they often form a major part of boreal and temperate fungal communities. However, Atheliales is generally understudied, and molecular data are scarce. Furthermore, the order is riddled with many taxonomic problems; some genera are non-monophyletic and several species have been shown to be more closely related to other orders. We investigated the phylogenetic position of genera that are currently listed in Atheliales sensu lato by employing an Agaricomycetes-wide dataset with emphasis on Atheliales including the type species of genera therein. A phylogenetic analysis based on 5.8S, LSU, rpb2, and tef1 (excluding third codon) retrieved Atheliales in subclass Agaricomycetidae, as sister to Lepidostromatales. In addition, a number of Atheliales genera were retrieved in other orders with strong support: Byssoporia in Russulales, Digitatispora in Agaricales, Hypochnella in Polyporales, Lyoathelia in Hymenochaetales, and Pteridomyces in Trechisporales. Based on this result, we assembled another dataset focusing on the clade with Atheliales sensu stricto and representatives from Lepidostromatales and Boletales as outgroups, based on ITS (ITS1-5.8S-ITS2), LSU, rpb2, and tef1. The reconstructed phylogeny of Atheliales returned five distinct lineages, which we propose here as families. Lobulicium, a monotypic genus with a distinct morphology of seven-lobed basidiospores, was placed as sister to the rest of Atheliales. A new family is proposed to accommodate this genus, Lobuliciaceae fam. nov. The remaining four lineages can be named following the family-level classification by Jülich (1982), and thus we opted to use the names Atheliaceae, Byssocorticiaceae, Pilodermataceae, and Tylosporaceae, albeit with amended circumscriptions.