Joaquim Fernando Pinto da Costa

Dr. Joaquim Fernando Pinto da Costa

Department of Mathematics, Faculty of Science, ‎University of Porto, 4169-007 Porto, Portugal
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Research Focus & Metrics

Academic Career Length

31Years (1996-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 March 2003 in Machine Learning
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PBPavel B. Brazdil
Pavel B. Brazdil
CSCarlos Soares
Carlos Soares
JCJoaquim Fernando Pinto da Costa
Joaquim Fernando Pinto da Costa

6 February 2009 in IEEE Transactions on Pattern Analysis and Machine Intelligence
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Journal Article
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JCJaime Cardoso
Jaime Cardoso
ACArtur Capela
Artur Capela
ARAna Rebelo
Ana Rebelo
CGCarlos Guedes
Carlos Guedes
JCJoaquim Fernando Pinto da Costa
Joaquim Fernando Pinto da Costa
The preservation of musical works produced in the past requires their digitalization and transformation into a machine-readable format. The processing of handwritten musical scores by computers remains far from ideal. One of the fundamental stages to carry out this task is the staff line detection. We investigate a general-purpose, knowledge-free method for the automatic detection of music staff lines based on a stable path approach. Lines affected by curvature, discontinuities, and inclination are robustly detected. Experimental results show that the proposed technique consistently outperforms well-established algorithms.

25 November 2005 in Australian & New Zealand Journal of Statistics
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JCJoaquim Fernando Pinto da Costa
Joaquim Fernando Pinto da Costa
CSCarlos Soares
Carlos Soares

1 January 2008 in Neural Networks
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Journal Article
Closed access
JCJoaquim Fernando Pinto da Costa
Joaquim Fernando Pinto da Costa
HAHugo Alonso
Hugo Alonso
JCJaime Cardoso
Jaime Cardoso

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Journal Article
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Rita MeloRita Melo
Rita Melo
RFRobert Fieldhouse
Robert Fieldhouse
AMAndré Alberto Melo
André Alberto Melo
João Domingos Galamba CorreiaJoão Domingos Galamba Correia
João Domingos Galamba Correia
Maria Natalia Dias Soeiro CordeiroMaria Natalia Dias Soeiro Cordeiro
Maria Natalia Dias Soeiro Cordeiro
Irina MoreiraIrina Moreira
Irina Moreira
Understanding protein-protein interactions is a key challenge in biochemistry. In this work, we describe a more accurate methodology to predict Hot-Spots (HS) in protein-protein interfaces from their native complex structure compared to previous published Machine Learning (ML) techniques. Our model is trained on a large number of complexes and on a significantly larger number of different structural- and evolutionary sequence-based features. In particular, we added interface size, type of interaction between residues at the interface of the complex, number of different types of residues at the interface and the Position-Specific Scoring Matrix (PSSM), for a total of 79 features. We used twenty-seven algorithms from a simple linear-based function to support-vector machine models with different cost functions. The best model was achieved by the use of the conditional inference random forest (c-forest) algorithm with a dataset pre-processed by the normalization of features and with up-sampling of the minor class. The method has an overall accuracy of 0.80, an F1-score of 0.73, a sensitivity of 0.76 and a specificity of 0.82 for the independent test set.