Yagmur Derman

Dr. Yagmur Derman


Research Focus & Metrics

Academic Career Length

16Years (2011-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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18 January 2017 in Toxins
Verified
Journal Article
Open access
PDF file
MPMichael Peck
Michael Peck
TSTheresa J. Smith
Theresa J. Smith
FAFabrizio Anniballi
Fabrizio Anniballi
JAJohn Austin
John Austin
LBLuca Bano
Luca Bano
SSSandra C. Stringer
Sandra C. Stringer
Botulinum neurotoxins are diverse proteins. They are currently represented by at least seven serotypes and more than 40 subtypes. New clostridial strains that produce novel neurotoxin variants are being identified with increasing frequency, which presents challenges when organizing the nomenclature surrounding these neurotoxins. Worldwide, researchers are faced with the possibility that toxins having identical sequences may be given different designations or novel toxins having unique sequences may be given the same designations on publication. In order to minimize these problems, an ad hoc committee consisting of over 20 researchers in the field of botulinum neurotoxin research was convened to discuss the clarification of the issues involved in botulinum neurotoxin nomenclature. This publication presents a historical overview of the issues and provides guidelines for botulinum neurotoxin subtype nomenclature in the future.

1 April 2015 in Food Microbiology
Verified
Journal Article
Closed access
YDYagmur Derman
Yagmur Derman
HSHenna Söderholm
Henna Söderholm
MLMiia Lindström
Miia Lindström
HKHannu Korkeala
Hannu Korkeala

2 October 2017 in Toxins
Verified
Journal Article
Open access
PDF file
CRChristine Rasetti-Escargueil
Christine Rasetti-Escargueil
AAArnaud AVRIL
Arnaud AVRIL
SMSebastian Miethe
Sebastian Miethe
CMChristelle MAZUET
Christelle MAZUET
YDYagmur Derman
Yagmur Derman
Michel PopoffMichel Popoff
Michel Popoff
The goal of the AntiBotABE Program was the development of recombinant antibodies that neutralize botulinum neurotoxins (BoNT) A, B and E. These serotypes are lethal and responsible for most human botulinum cases. To improve therapeutic efficacy, the heavy and light chains (HC and LC) of the three BoNT serotypes were targeted to achieve a synergistic effect (oligoclonal antibodies). For antibody isolation, macaques were immunized with the recombinant and non-toxic BoNT/A, B or E, HC or LC, followed by the generation of immune phage-display libraries. Antibodies were selected from these libraries against the holotoxin and further analyzed in in vitro and ex vivo assays. For each library, the best ex vivo neutralizing antibody fragments were germline-humanized and expressed as immunoglobulin G (IgGs). The IgGs were tested in vivo, in a standardized model of protection, and challenged with toxins obtained from collections of Clostridium strains. Protective antibody combinations against BoNT/A and BoNT/B were evidenced and for BoNT/E, the anti-LC antibody alone was found highly protective. The combination of these five antibodies as an oligoclonal antibody cocktail can be clinically and regulatorily developed while their high “humanness” predicts a high tolerance in humans.

1 November 2011 in Journal of Food Protection
Verified
Journal Article
Closed access
YDYagmur Derman
Yagmur Derman
MLMiia Lindström
Miia Lindström
KSKatja Selby
Katja Selby
HKHannu Korkeala
Hannu Korkeala
The minimum and maximum growth temperatures and the maximum growth rates at 10, 30, 37, and 40°C were determined for 24 group II Clostridium botulinum strains. Genetic diversity of the strains was revealed by amplified fragment length polymorphism (AFLP) analysis. The minimum growth temperatures ranged from 6.2 to 8.6°C, and the maximum growth temperatures ranged from 34.7 to 39.9°C. The mean maximum growth temperatures and mean maximum growth rates of type E strains at 37°C were significantly higher than those of type B and type F strains. A significant correlation between maximum growth rates at 37°C and maximum growth temperatures was found for all strains. Some type E strains with a high minimum growth temperature also had a higher maximum growth rate at 37°C than at 30°C, which suggests that some group II C. botulinum strains are more mesophilic in their growth properties than others. We found relatively small differences between AFLP clusters, indicating that diverse genetic background among the strains was not reflected in the growth properties. The growth characteristics of group II C. botulinum and some type E strains with mesophilic growth properties may have an impact on inoculation studies and predictive modeling for assessing the safety of foods.

1 October 2013 in International Journal of Food Microbiology
Verified
Journal Article
Closed access
YDYagmur Derman
Yagmur Derman
MIMarita Isokallio
Marita Isokallio
MLMiia Lindström
Miia Lindström
HKHannu Korkeala
Hannu Korkeala

12 September 2016 in Toxins
Verified
Journal Article
Open access
PDF file
YDYagmur Derman
Yagmur Derman
KSKatja Selby
Katja Selby
SMSebastian Miethe
Sebastian Miethe
AFAndré Frenzel
André Frenzel
YLYvonne Liu
Yvonne Liu
HKHannu Korkeala
Hannu Korkeala
Botulinum neurotoxins (BoNTs) cause botulism and are the deadliest naturally-occurring substances known to humans. BoNTs have been classified as one of the category A agents by the Centers for Disease Control and Prevention, indicating their potential use as bioweapons. To counter bio-threat and naturally-occurring botulism cases, well-tolerated antibodies by humans that neutralize BoNTs are relevant. In our previous work, we showed the neutralizing potential of macaque (Macaca fascicularis)-derived scFv-Fc (scFv-Fc ELC18) by in vitro endopeptidase immunoassay and ex vivo mouse phrenic nerve-hemidiaphragm assay by targeting the light chain of the botulinum neurotoxin type E (BoNT/E). In the present study, we germline-humanized scFv-Fc ELC18 into a full IgG hu8ELC18 to increase its immunotolerance by humans. We demonstrated the protection and prophylaxis capacity of hu8ELC18 against BoNT/E in a mouse model. A concentration of 2.5 ng/mouse of hu8ELC18 protected against 5 mouse lethal dose (MLD) in a mouse protection assay and complete neutralization of 1 LD50 of pure BoNT/E toxin was achieved with 8 ng of hu8ELC18 in mouse paralysis assay. Furthermore, hu8ELC18 protected mice from 5 MLD if injected up to 14 days prior to intraperitoneal BoNT/E administration. This newly-developed humanized IgG is expected to have high tolerance in humans.