Martin Siler

Dr. Martin Siler

orcid

Research Focus & Metrics

Academic Career Length

23Years (2004-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
20 January 2013 in Nature Photonics
Verified
Journal Article
Closed access
PDF file
OBO. Brzobohatý
O. Brzobohatý
VKV. Karásek
V. Karásek
MSMartin Siler
Martin Siler
LCL. Chvátal
L. Chvátal
TČTomáš Čižmár
Tomáš Čižmár
PZP. Zemánek
P. Zemánek

4 December 2017 in Nature Photonics
Verified
Journal Article
Closed access
PDF file
ILIvo T. Leite
Ivo T. Leite
STSergey Turtaev
Sergey Turtaev
XJXin Jiang
Xin Jiang
MSMartin Siler
Martin Siler
ACAlfred Cuschieri
Alfred Cuschieri
TČTomáš Čižmár
Tomáš Čižmár

10 July 2006 in Physical Review B
Verified
Journal Article
Closed access
PDF file
TČTomáš Čižmár
Tomáš Čižmár
MSMartin Siler
Martin Siler
MŠMojmír Šerý
Mojmír Šerý
PZPavel Zemánek
Pavel Zemánek
VGVeneranda Garcés-Chávez
Veneranda Garcés-Chávez
KDKishan Dholakia
Kishan Dholakia
An extended interference pattern close to the surface may result in either a transmissive or an evanescent surface field for large-area manipulation of trapped particles. The affinity of differing particle sizes to a moving standing-wave light pattern allows us to hold and deliver them in a bidirectional manner and demonstrate experimentally particle sorting in the submicrometer region. This is performed without the need of fluid flow (static sorting). Theoretical predictions support the experimental observations that certain sizes of colloidal particles thermally hop more easily between neighboring traps. A generic method is also presented for particle position detection in an extended periodic light pattern and applied to characterization of optical traps and particle behavior.

24 October 2013 in Molecules
Verified
Journal Article
Open access
PDF file
SBSilvie Bernatova
Silvie Bernatova
OSOta Samek
Ota Samek
ZPZdeněk Pilát
Zdeněk Pilát
MŠMojmír Šerý
Mojmír Šerý
JJJan Jezek
Jan Jezek
FRFilip Růžička
Filip Růžička
Antibiotics cure infections by influencing bacterial growth or viability. Antibiotics can be divided to two groups on the basis of their effect on microbial cells through two main mechanisms, which are either bactericidal or bacteriostatic. Bactericidal antibiotics kill the bacteria and bacteriostatic antibiotics suppress the growth of bacteria (keep them in the stationary phase of growth). One of many factors to predict a favorable clinical outcome of the potential action of antimicrobial chemicals may be provided using in vitro bactericidal/bacteriostatic data (e.g., minimum inhibitory concentrations—MICs). Consequently, MICs are used in clinical situations mainly to confirm resistance, and to determine the in vitro activities of new antimicrobials. We report on the combination of data obtained from MICs with information on microorganisms’ “fingerprint” (e.g., DNA/RNA, and proteins) provided by Raman spectroscopy. Thus, we could follow mechanisms of the bacteriostatic versus bactericidal action simply by detecting the Raman bands corresponding to DNA. The Raman spectra of Staphylococcus epidermidis treated with clindamycin (a bacteriostatic agent) indeed show little effect on DNA which is in contrast with the action of ciprofloxacin (a bactericidal agent), where the Raman spectra show a decrease in strength of the signal assigned to DNA, suggesting DNA fragmentation.

21 December 2018 in Nature Communications
Verified
Journal Article
Open access
PDF file
VSV. Svak
V. Svak
OBO. Brzobohatý
O. Brzobohatý
MSMartin Siler
Martin Siler
PJP. Jákl
P. Jákl
JKJ. Kaňka
J. Kaňka
SSS. H. Simpson
S. H. Simpson
We provide a vivid demonstration of the mechanical effect of transverse spin momentum in an optical beam in free space. This component of the Poynting momentum was previously thought to be virtual, and unmeasurable. Here, its effect is revealed in the inertial motion of a probe particle in a circularly polarized Gaussian trap, in vacuum. Transverse spin forces combine with thermal fluctuations to induce a striking range of non-equilibrium phenomena. With increasing beam power we observe (i) growing departures from energy equipartition, (ii) the formation of coherent, thermally excited orbits and, ultimately, (iii) the ejection of the particle from the trap. As well as corroborating existing measurements of spin momentum, our results reveal its dynamic effect. We show how the under-damped motion of probe particles in structured light fields can expose the nature and morphology of optical momentum flows, and provide a testbed for elementary non-equilibrium statistical mechanics.

5 April 2023 in Nature Communications
Verified
Journal Article
Open access
PDF file
MSMiroslav Stibůrek
Miroslav Stibůrek
POPetra Ondráčková
Petra Ondráčková
TTTereza Tučková
Tereza Tučková
STSergey Turtaev
Sergey Turtaev
MSMartin Siler
Martin Siler
TČTomáš Čižmár
Tomáš Čižmár
Light-based in-vivo brain imaging relies on light transport over large distances of highly scattering tissues. Scattering gradually reduces imaging contrast and resolution, making it difficult to reach structures at greater depths even with the use of multiphoton techniques. To reach deeper, minimally invasive endo-microscopy techniques have been established. These most commonly exploit graded-index rod lenses and enable a variety of modalities in head-fixed and freely moving animals. A recently proposed alternative is the use of holographic control of light transport through multimode optical fibres promising much less traumatic application and superior imaging performance. We present a 110 μm thin laser-scanning endo-microscope based on this prospect, enabling in-vivo volumetric imaging throughout the whole depth of the mouse brain. The instrument is equipped with multi-wavelength detection and three-dimensional random access options, and it performs at lateral resolution below 1 μm. We showcase various modes of its application through the observations of fluorescently labelled neurones, their processes and blood vessels. Finally, we demonstrate how to exploit the instrument to monitor calcium signalling of neurones and to measure blood flow velocity in individual vessels at high speeds.