Rakibul Haque Rafid

Mr. Rakibul Haque Rafid

orcid

Research Focus & Metrics

Academic Career Length

6Years (2021-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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17 December 2021 in Biology
Verified
Journal Article
Open access
PDF file
SMSidratul Montaha
Sidratul Montaha
Sami AzamSami Azam
Sami Azam
RRRakibul Haque Rafid
Rakibul Haque Rafid
PGPronab Ghosh
Pronab Ghosh
MHMd. Zahid Hasan
Md. Zahid Hasan
FBFriso De Boer
Friso De Boer
Background: Identification and treatment of breast cancer at an early stage can reduce mortality. Currently, mammography is the most widely used effective imaging technique in breast cancer detection. However, an erroneous mammogram based interpretation may result in false diagnosis rate, as distinguishing cancerous masses from adjacent tissue is often complex and error-prone. Methods: Six pre-trained and fine-tuned deep CNN architectures: VGG16, VGG19, MobileNetV2, ResNet50, DenseNet201, and InceptionV3 are evaluated to determine which model yields the best performance. We propose a BreastNet18 model using VGG16 as foundational base, since VGG16 performs with the highest accuracy. An ablation study is performed on BreastNet18, to evaluate its robustness and achieve the highest possible accuracy. Various image processing techniques with suitable parameter values are employed to remove artefacts and increase the image quality. A total dataset of 1442 preprocessed mammograms was augmented using seven augmentation techniques, resulting in a dataset of 11,536 images. To investigate possible overfitting issues, a k-fold cross validation is carried out. The model was then tested on noisy mammograms to evaluate its robustness. Results were compared with previous studies. Results: Proposed BreastNet18 model performed best with a training accuracy of 96.72%, a validating accuracy of 97.91%, and a test accuracy of 98.02%. In contrast to this, VGGNet19 yielded test accuracy of 96.24%, MobileNetV2 77.84%, ResNet50 79.98%, DenseNet201 86.92%, and InceptionV3 76.87%. Conclusions: Our proposed approach based on image processing, transfer learning, fine-tuning, and ablation study has demonstrated a high correct breast cancer classification while dealing with a limited number of complex medical images.

11 November 2022 in Biology
Verified
Journal Article
Open access
PDF file
RRRakibul Haque Rafid
Rakibul Haque Rafid
Sami AzamSami Azam
Sami Azam
SMSidratul Montaha
Sidratul Montaha
AKAsif Karim
Asif Karim
Kayes Uddin FahimKayes Uddin Fahim
Kayes Uddin Fahim
MHMd. Zahid Hasan
Md. Zahid Hasan
Background: Breast cancer, behind skin cancer, is the second most frequent malignancy among women, initiated by an unregulated cell division in breast tissues. Although early mammogram screening and treatment result in decreased mortality, differentiating cancer cells from surrounding tissues are often fallible, resulting in fallacious diagnosis. Method: The mammography dataset is used to categorize breast cancer into four classes with low computational complexity, introducing a feature extraction-based approach with machine learning (ML) algorithms. After artefact removal and the preprocessing of the mammograms, the dataset is augmented with seven augmentation techniques. The region of interest (ROI) is extracted by employing several algorithms including a dynamic thresholding method. Sixteen geometrical features are extracted from the ROI while eleven ML algorithms are investigated with these features. Three ensemble models are generated from these ML models employing the stacking method where the first ensemble model is built by stacking ML models with an accuracy of over 90% and the accuracy thresholds for generating the rest of the ensemble models are >95% and >96. Five feature selection methods with fourteen configurations are applied to notch up the performance. Results: The Random Forest Importance algorithm, with a threshold of 0.045, produces 10 features that acquired the highest performance with 98.05% test accuracy by stacking Random Forest and XGB classifier, having a higher than >96% accuracy. Furthermore, with K-fold cross-validation, consistent performance is observed across all K values ranging from 3–30. Moreover, the proposed strategy combining image processing, feature extraction and ML has a proven high accuracy in classifying breast cancer.

5 January 2023 in Biomedicines
Verified
Journal Article
Open access
PDF file
Sami AzamSami Azam
Sami Azam
RRRakibul Haque Rafid
Rakibul Haque Rafid
SMSidratul Montaha
Sidratul Montaha
AKAsif Karim
Asif Karim
MJMirjam Jonkman
Mirjam Jonkman
FBFriso De Boer
Friso De Boer
Current research indicates that for the identification of lung disorders, comprising pneumonia and COVID-19, structural distortions of bronchi and arteries (BA) should be taken into account. CT scans are an effective modality to detect lung anomalies. However, anomalies in bronchi and arteries can be difficult to detect. Therefore, in this study, alterations of bronchi and arteries are considered in the classification of lung diseases. Four approaches to highlight these are introduced: (a) a Hessian-based approach, (b) a region-growing algorithm, (c) a clustering-based approach, and (d) a color-coding-based approach. Prior to this, the lungs are segmented, employing several image preprocessing algorithms. The utilized COVID-19 Lung CT scan dataset contains three classes named Non-COVID, COVID, and community-acquired pneumonia, having 6983, 7593, and 2618 samples, respectively. To classify the CT scans into three classes, two deep learning architectures, (a) a convolutional neural network (CNN) and (b) a CNN with long short-term memory (LSTM) and an attention mechanism, are considered. Both these models are trained with the four datasets achieved from the four approaches. Results show that the CNN model achieved test accuracies of 88.52%, 87.14%, 92.36%, and 95.84% for the Hessian, the region-growing, the color-coding, and the clustering-based approaches, respectively. The CNN with LSTM and an attention mechanism model results in an increase in overall accuracy for all approaches with an 89.61%, 88.28%, 94.61%, and 97.12% test accuracy for the Hessian, region-growing, color-coding, and clustering-based approaches, respectively. To assess overfitting, the accuracy and loss curves and k-fold cross-validation technique are employed. The Hessian-based and region-growing algorithm-based approaches produced nearly equivalent outcomes. Our proposed method outperforms state-of-the-art studies, indicating that it may be worthwhile to pay more attention to BA features in lung disease classification based on CT images.

12 January 2024 in Journal of Imaging Informatics in Medicine
Verified
Journal Article
Closed access
PDF file
Sami AzamSami Azam
Sami Azam
SMSidratul Montaha
Sidratul Montaha
MRMohaimenul Azam Khan Raiaan
Mohaimenul Azam Khan Raiaan
RRRakibul Haque Rafid
Rakibul Haque Rafid
MMMd Saddam Hossain Mukta
Md Saddam Hossain Mukta
MJMirjam Jonkman
Mirjam Jonkman

30 June 2023 in Biomedicines
Verified
Journal Article
Open access
PDF file
Sami AzamSami Azam
Sami Azam
SMSidratul Montaha
Sidratul Montaha
RRRakibul Haque Rafid
Rakibul Haque Rafid
AKAsif Karim
Asif Karim
MJMirjam Jonkman
Mirjam Jonkman
Anne B. ChangAnne B. Chang
Anne B. Chang
Bronchiectasis in children can progress to a severe lung condition if not diagnosed and treated early. The radiological diagnostic criteria for the diagnosis of bronchiectasis is an increased broncho-arterial (BA) ratio. From high-resolution computed tomography (HRCT) scans, the BA pairs must be detected first to derive the BA ratio. This study aims to identify potential BA pairs from HRCT scans of children undertaken to evaluate suppurative lung disease through an automated approach. After segmenting the lung regions, the HRCT scans are cleaned using a histogram analysis-based approach followed by a potential arteries identification process comprising four conditions based on imaging features. Potential arteries and their connected components are extracted, and potential bronchi are identified. Finally, the coordinates of potential arteries and potential bronchi are matched as the last step of BA pairs extraction. A total of 8–50 BA pairs are detected for each patient. Additionally, the area and several diameters of the bronchi and arteries are measured, and BA ratios based on these are calculated. Through this approach, the BA pairs of a CT scan datasets are detected and utilizing a deep learning model, a high classification test accuracy of 98.53% is achieved, validating the robustness of the proposed BA detection approach. The results show that visible BA pairs can be identified and segmented automatically, and the BA ratio calculated may help diagnose bronchiectasis with less effort and time.