Cerasus sachalinensis is widely used in cool regions as a sweet cherry rootstock and is known for its sensitivity to soil waterlogging and waterlogging stress. However, the limited availability of Cerasus genomic resources has considerably restricted the exploration of its waterlogging response mechanism. To understand its reaction to short-term waterlogging, we analyzed the physiology and transcriptomes of C. sachalinensis roots in response to different waterlogging durations. In this study, 12,487 differentially expressed genes (DEGs) were identified from Cerasus sachalinensis roots under different waterlogging durations. Carbon metabolism and energy maintenance formed the first coping mechanism stage of C. sachalinensis in response to low oxygen conditions. Root energy processes, including root respiration and activities of the fermentation enzymes alcohol dehydrogenase, pyruvate decarboxylase, and lactate dehydrogenase, showed unique changes after 0 h, 3 h, 6 h, and 24 h of waterlogging exposure. Ribonucleic acid sequencing was used to analyze transcriptome changes in C. sachalinensis roots treated with 3 h, 6 h, and 24 h of waterlogging stress. After de novo assembly, 597,474 unigenes were recognized, of which 355,350 (59.47%) were annotated. To identify the most important pathways represented by DEGs, Gene Ontology and Kyoto Encyclopedia of Genes and Genomes databases were used to compare these genes. The first stage of root reaction to waterlogging stress was activation of carbohydrate metabolism to produce more glucose and maintain energy levels. At 3 h, the glycolytic and fermentation pathways were activated to maintain adenosine triphosphate production. At 24 h, pathways involved in the translation of proteins were activated to further assist the plant in tolerating waterlogging stress. These findings will facilitate a further understanding of the potential mechanisms of plant responses to waterlogging at physiological and transcriptome levels. Carbon metabolism and energy maintenance formed the first coping mechanism C. sachalinensis in response to low oxygen conditions, and they may be responsible for its short-term waterlogging response. Our study not only provides the assessment of genomic resources of Cerasus but also paves the way for probing the metabolic and molecular mechanisms underlying the short-term waterlogging response in C. sachalinensis.

To understand the roles of Malus rootstock, scion, and their interaction in Cd accumulation and tolerance, four scion/rootstock combinations consisting of the apple cultivars “Hanfu” (HF) and “Fuji” (FJ) grafted onto M. baccata (Mb) or M. micromalus “qingzhoulinqin” (Mm) rootstocks differing in relative Cd tolerance were exposed either to 0 µM or 50 µM CdCl₂ for 18 d. Cd accumulation and tolerance in grafted Malus plants varied within rootstock, scion, and rootstock–scion interaction. Cd-induced decreases in photosynthesis, photosynthetic pigment level, and biomass were lower for HF grafted onto Mb than those for HF grafted onto Mm. Reductions in growth and photosynthetic rate were always the lowest for HF/Mb. Cd concentration, bioconcentration factor (BCF), and translocation factor (T_f) were always comparatively higher in HF and FJ grafted onto rootstock Mm than in HF and FJ grafted on Mb, respectively. When HF and FJ were grafted onto the same rootstock, the root Cd concentrations were always higher in HF than FJ, whereas the shoot Cd concentrations displayed the opposite trend. The shoot Cd concentrations and T_f were lower for HF/Mb than the other scion/rootstock combinations. Rootstock, scion, and rootstock–scion interaction also affected subcellular Cd distribution. Immobilization of Cd in the root cell walls may be a primary Cd mobility and toxicity reduction strategy in Malus. The rootstock and scion also had statistically significant influences on ROS level and antioxidant activity. Cd induced more severe oxidative stress in HF and FJ grafted onto Mm than it did in HF and FJ grafted onto Mb. Compared with FJ, HF had lower foliar O₂^-, root H₂O₂, and root and leaf MDA levels, but higher ROS-scavenging capacity. The rootstock, scion, and rootstock–scion interaction affected the mRNA transcript levels of several genes involved in Cd uptake, transport, and detoxification including HA7, FRO2-like, NRAMP1, NRAMP3, HMA4, MT2, NAS1, and ABCC1. Hence, the responses of grafted Malus plants to Cd toxicity vary with rootstock, scion, and rootstock–scion interaction.

The interaction between plant, soil and microorganism plays a crucial role in sustainable development of terrestrial ecosystem function and diversity. However, little information is known about how plant growth, soil organic carbon (C) fractions and microorganism respond to exogenous C addition in soils with low organic C content. Three levels of ¹³C-glucose (equal to 0, 100% and 500% of initial microbial biomass C) were added to non-sterilized (corresponding to treatment abbreviation of CK, Glu-1, Glu-2, respectively) and sterilized soils (corresponding to treatment abbreviation of SS, SS+Glu-1, SS+Glu-2, respectively) planted with apple rootstock (Malus baccata (L.) Borkh.) seedings. The objectives of this study were to analyse the dynamics of soil organic C (SOC) fractions and soil bacterial community diversity with glucose levels and soil sterilization, and to explore the morphology of roots and nitrogen (N) metabolism by plant after glucose addition to sterilized/non-sterilized soils. Results showed that the contents of labile organic C fractions were significantly varied (P<0.05) with the levels of glucose addition and soil sterilization. SS+Glu-2 and Glu-2 treatments increased the contents of labile organic C fractions, on average, by 48.47% and 35.33% compared with no glucose addition, respectively. About 21.42% and 16.17% of glucose-C remained in sterilized and non-sterilized soils, respectively at the end of experiment (day 45). Regardless of soil sterilized or not, the glucose addition increased the richness and diversity indices of soil bacterial community compared with no-glucose addition. The glucose addition optimized root zone conditions, and enhanced root vitality, morphology and biomass. Both SS+Glu-2 and Glu-2 treatments significantly enhanced (P<0.05) the contents of nitrate (NO₃^—N) and nitrite (NO₂^—N), but sharply decreased (P<0.05) the ammonium (NH₄⁺-N) content compared with no glucose addition. Also, these two treatments significantly (P<0.05) increased the enzymic activities and gene transcript levels involved in root N metabolism, which demonstrated that the high level of glucose addition promoted N assimilation and transformation into free amino acids by root. Overall, the addition of exogenous C to not only promotes its fixation and bacterial community diversity in C-poor soils, but also improves root morphology and N absorption by plant.

Arbuscular mycorrhizal fungi (AMF) affect cadmium (Cd) accumulation and tolerance in host plants. However, the effects of AMF on Cd accumulation and phytotoxicity and their underlying mechanism in apples remain uncharacterized. In this study, the comprehensive physiological and molecular responses of uninoculated and Rhizophagus intraradices-inoculated Malus hupehensis Rehd. rootstocks exposed to 0 or 300 μM Cd were investigated. AMF inoculation mitigated Cd-induced growth and photosynthesis inhibition and nutrient ion disorders. It also lowered the concentrations of Cd in all tissues and reduced Cd transport to the shoots. Compared to uninoculated apple plants, those inoculated with mycorrhizal fungi reduced the mobility and toxicity of Cd by altering its form and binding it to the cell walls of the roots and leaves. AMF inoculation ameliorated Cd stress by altering endogenous phytohormone levels and triggering enzymatic and non-enzymatic antioxidant systems. Transcriptome analysis revealed that the differentially expressed genes (DEGs) associated with AMF under Cd stress regulated carbohydrate and amino acid biosynthesis and metabolism, as well as phytohormone biosynthesis and signal transduction. Furthermore, AMF inoculation downregulated certain genes involved in Cd uptake and transport while upregulating other genes involved in detoxification. These results suggest that AMF alleviate Cd phytotoxicity by orchestrated physiological and transcriptomic regulation in M. hupehensis Rehd., providing valuable insights into the efficacy of AMF inoculation in improving the heavy metal resistance of fruit trees.

Soil salinization, caused by the extensive use of inorganic fertilizers, has restricted the development of the sweet cherry industry. Plant growth-promoting rhizobacteria (PGPR) are beneficial bacteria that colonize the area around the roots, playing a crucial role in promoting plant growth, alleviating salt stress, and enhancing crop productivity. However, few studies have investigated whether PGPR can alleviate salt stress in sweet cherry. This study aimed to investigate whether co-inoculation (MIX) of Pantoea ananatis D1-28 and Bacillus aryabhattai F isolated from the rhizosphere of Zea mays L. could improve salt tolerance in seedlings of the common cherry (Prunus avium) rootstock Gisela 6. The results indicated that MIX inoculation alleviated salt stress and enhanced plant height and biomass. Under 100 mM salt stress, the MIX strain inoculant treatment significantly increased the net photosynthetic rate (14.38%), transpiration rate (22.61%), stomatal conductance (15.63%), total soluble sugar content (18.72%), free proline content (23.79%), superoxide dismutase activity (19.53%), and peroxidase activity (21.96%) but reduced the O₂•^- (16.99%) and H₂O₂ contents (17.59%) in Gisela 6 compared to CK without PGPR inoculation. After the MIX treatment, multiple indices showed strong correlations and improved salt stress resistance. In addition, principal component analysis showed that under 100 mM salt concentration, the MIX strain exhibited the largest separation from CK and had the strongest alleviating effect on plant salt stress. These results suggest that co-inoculation with the strains P. ananatis D1-28 and B. aryabhattai F effectively alleviated salt stress, improved plant photosynthetic capacity, and increased plant biomass by regulating antioxidant defense system and osmotic adjustment substances.

Low temperature is an abiotic stress factor limiting the distribution of fruit tree cultivation areas. As temperate deciduous fruit trees, apple (Malus domestica) trees go dormant in the winter to adapt to or avoid damage caused by low temperatures. The capacity for cold resistance is closely linked to the physiological, biochemical, and structural characteristics of one-year-old branches. In this study, we investigated such changes in the branches of cold-resistant ‘Hanfu’ (HF) and cold-sensitive ‘Naganofuji 2’ (CF) apple varieties. The relative electrical conductivity, malondialdehyde content, and reactive oxygen species content of HF branches were lower than those of CF branches, while the antioxidant enzyme activity was higher in HF. The proline, soluble protein, and soluble sugar contents in both varieties showed an initial increase, followed by a subsequent decrease. Sucrose and sorbitol were the main sugar components, but sucrose and fructose were higher in HF than in CF. The periderm, phloem, and xylem of HF branches were also found to be thicker than those of CF branches, while the vessel diameter was smaller and the density greater. The results of this study provide a theoretical reference for further research on the low temperature adaptability of apple tree branches during dormancy.