Fen Liu

Dr. Fen Liu


Research Focus & Metrics

Academic Career Length

8Years (2019-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 March 2024 in Plant Stress
Verified
Journal Article
Open access
MKMuneer Ahmed Khoso
Muneer Ahmed Khoso
Sindho WaganSindho Wagan
Sindho Wagan
IAIntikhab Alam
Intikhab Alam
AHAmjad Hussain
Amjad Hussain
QAQurban Ali
Qurban Ali
FLFen Liu
Fen Liu
Through a variety of mechanisms, including increasing the amount of readily available mineral nutrients, regulating phytohormone levels, and biocontrol of phytopathogens, plant growth-promoting rhizobacteria (PGPR) associated with the plant rhizosphere either directly or indirectly stimulates plant growth and development. The establishment, survival, and persistence of PGPR inoculants are widely acknowledged to be contingent upon these two parameters, in addition to the intricate network of interactions within the rhizosphere. In general, the soil is a moist environment with significant amounts of carbon that have been degraded and harbors a large population of soil microbes. The rhizo-microbiome is crucial to agriculture because a wide variety of root exudates and plant cell debris attract unique and distinct patterns of microbial colonization. The rhizo-microbiome plays a crucial role in the manufacture and regulation of extracellular molecules, including hormones, secondary metabolites, antibiotics, and various signaling chemicals. Additionally, the microbial composition within the rhizo-microbiome influences soil texture enhancement. Research has shown that PGPR can be used to treat plants or inoculate plants to promote plant development. PGPR alters the physiology of the entire plant, which enhances nutrient uptake and affects the effectiveness of root activity. The specific biochemical processes of plants involved in this phenomenon are often not well understood. Nevertheless, new studies have shed light on the mechanisms via which signaling by PGPR can induce various plant responses, both at the local and systemic levels. Insufficient information is available regarding the impact of the PGPR mechanism and molecules on metabolic pathways in root characteristics. Consequently, this review will concentrate on elucidating the PGPR mechanism and identifying the essential molecules that exert influence on root-microbe interactions.

8 November 2022 in Frontiers in Plant Science
Verified
Journal Article
Open access
MKMuneer Ahmed Khoso
Muneer Ahmed Khoso
Amjad HussainAmjad Hussain
Amjad Hussain
FRFaujiah Nurhasanah Ritonga
Faujiah Nurhasanah Ritonga
QAQurban Ali
Qurban Ali
MCMuhammed Malook Channa
Muhammed Malook Channa
Hakim ManghwarHakim Manghwar
Hakim Manghwar
The WRKY transcription factor (TF) belongs to one of the major plant protein superfamilies. The WRKY TF gene family plays an important role in the regulation of transcriptional reprogramming associated with plant stress responses. Change in the expression patterns of WRKY genes or the modifications in their action; participate in the elaboration of numerous signaling pathways and regulatory networks. WRKY proteins contribute to plant growth, for example, gamete formation, seed germination, post-germination growth, stem elongation, root hair growth, leaf senescence, flowering time, and plant height. Moreover, they play a key role in many types of environmental signals, including drought, temperature, salinity, cold, and biotic stresses. This review summarizes the current progress made in unraveling the functions of numerous WRKY TFs under drought, salinity, temperature, and cold stresses as well as their role in plant growth and development.

Verified
Journal Article
Open access
PDF file
Hakim ManghwarHakim Manghwar
Hakim Manghwar
Amjad HussainAmjad Hussain
Amjad Hussain
QAQurban Ali
Qurban Ali
FLFen Liu
Fen Liu
Plants are vulnerable to a number of abiotic and biotic stresses that cause a substantial decrease in the production of plants. Plants respond to different environmental stresses by experiencing a series of molecular and physiological changes coordinated by various phytohormones. The use of phytohormones to alleviate stresses has recently achieved increasing interest. Brassinosteroids (BRs) are a group of polyhydroxylated steroidal phytohormones that are required for the development, growth, and productivity of plants. These hormones are involved in regulating the division, elongation, and differentiation of numerous cell types throughout the entire plant life cycle. BR studies have drawn the interest of plant scientists over the last few decades due to their flexible ability to mitigate different environmental stresses. BRs have been shown in numerous studies to have a positive impact on plant responses to various biotic and abiotic stresses. BR receptors detect the BR at the cell surface, triggering a series of phosphorylation events that activate the central transcription factor (TF) Brassinazole-resistant 1 (BZR1), which regulates the transcription of BR-responsive genes in the nucleus. This review discusses the discovery, occurrence, and chemical structure of BRs in plants. Furthermore, their role in the growth and development of plants, and against various stresses, is discussed. Finally, BR signaling in plants is discussed.

15 October 2019 in The Plant Cell
Verified
Journal Article
Closed access
PDF file
XHXiao Huang
Xiao Huang
CZChunyan Zheng
Chunyan Zheng
FLFen Liu
Fen Liu
CYChao Yang
Chao Yang
PZPing Zheng
Ping Zheng
FLFaqiang Li
Faqiang Li
Under nutrient and energy-limiting conditions, plants up-regulate sophisticated catabolic pathways such as autophagy to remobilize nutrients and restore energy homeostasis. Autophagic flux is tightly regulated under these circumstances through the AuTophaGy-related1 (ATG1) kinase complex, which relays upstream nutrient and energy signals to the downstream components that drive autophagy. Here, we investigated the role(s) of the Arabidopsis (Arabidopsis thaliana) ATG1 kinase during autophagy through an analysis of a quadruple mutant deficient in all four ATG1 isoforms. These isoforms appear to act redundantly, including the plant-specific, truncated ATG1t variant, and like other well-characterized atg mutants, homozygous atg1abct quadruple mutants display early leaf senescence and hypersensitivity to nitrogen and fixed-carbon starvations. Although ATG1 kinase is essential for up-regulating autophagy under nitrogen deprivation and short-term carbon starvation, it did not stimulate autophagy under prolonged carbon starvation. Instead, an ATG1-independent response arose requiring phosphatidylinositol-3-phosphate kinase (PI3K) and SUCROSE NONFERMENTING1-RELATED PROTEIN KINASE1 (SnRK1), possibly through phosphorylation of the ATG6 subunit within the PI3K complex by the catalytic KIN10 subunit of SnRK1. Together, our data connect ATG1 kinase to autophagy and reveal that plants engage multiple pathways to activate autophagy during nutrient stress, which include the ATG1 route as well as an alternative route requiring SnRK1 and ATG6 signaling.

30 September 2020 in The Plant Cell
Verified
Journal Article
Open access
PDF file
FLFen Liu
Fen Liu
Weiming HuWeiming Hu
Weiming Hu
FLFaqiang Li
Faqiang Li
RMRichard S. Marshall
Richard S. Marshall
XZXavier Zarza
Xavier Zarza
RVRichard D. Vierstra
Richard D. Vierstra
Genetic analysis of the Arabidopsis VPS34 PI3K complex through the ATG14 or VPS38 subunits revealed a preferential role for ATG14 during autophagy and the wides

Verified
Journal Article
Open access
PDF file
YZYanhui Zhou
Yanhui Zhou
Hakim ManghwarHakim Manghwar
Hakim Manghwar
Weiming HuWeiming Hu
Weiming Hu
FLFen Liu
Fen Liu
In all eukaryotes, autophagy is the main pathway for nutrient recycling, which encapsulates parts of the cytoplasm and organelles in double-membrane vesicles, and then fuses with lysosomes/vacuoles to degrade them. Autophagy is a highly dynamic and relatively complex process influenced by multiple factors. Under normal growth conditions, it is maintained at basal levels. However, when plants are subjected to biotic and abiotic stresses, such as pathogens, drought, waterlogging, nutrient deficiencies, etc., autophagy is activated to help cells to survive under stress conditions. At present, the regulation of autophagy is mainly reflected in hormones, second messengers, post-transcriptional regulation, and protein post-translational modification. In recent years, the degradation mechanism of autophagy-related proteins has attracted much attention. In this review, we have summarized how autophagy-related proteins are degraded in yeast, animals, and plants, which will help us to have a more comprehensive and systematic understanding of the regulation mechanisms of autophagy. Moreover, research progress on the degradation of autophagy-related proteins in plants has been discussed.