Karel Fliegel

Dr. Karel Fliegel

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Research Focus & Metrics

Academic Career Length

23Years (2004-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 June 2016
Verified
Conference Paper
Closed access
LKLukas Krasula
Lukas Krasula
KFKarel Fliegel
Karel Fliegel
PCPatrick Le Callet
Patrick Le Callet
MKMilos Klima
Milos Klima
There are several standard methods for evaluating the performance of models for objective quality assessment with respect to results of subjective tests. However, all of them suffer from one or more of the following drawbacks: They do not consider the uncertainty in the subjective scores, requiring the models to make certain decision where the correct behavior is not known. They are vulnerable to the quality range of the stimuli in the experiments. In order to compare the models, they require a mapping of predicted values to the subjective scores, thus not comparing the models exactly as they are used in the real scenarios. In this paper, new methodology for objective models performance evaluation is proposed. The method is based on determining the classification abilities of the models considering two scenarios inspired by the real applications. It does not suffer from the previously stated drawbacks and enables to easily evaluate the performance on the data from multiple subjective experiments. Moreover, techniques to determine statistical significance of the performance differences are suggested. The proposed framework is tested on several selected metrics and datasets, showing the ability to provide a complementary information about the models' behavior while being in parallel with other state-of-the-art methods.

6 October 2015 in Bioinformatics
Verified
Journal Article
Closed access
PDF file
PKPavel Křížek
Pavel Křížek
TLTomáš Lukeš
Tomáš Lukeš
MOMartin Ovesný
Martin Ovesný
KFKarel Fliegel
Karel Fliegel
GHGuy M. Hagen
Guy M. Hagen
Summary: SIMToolbox is an open-source, modular set of functions for MATLAB equipped with a user-friendly graphical interface and designed for processing two-dimensional and three-dimensional data acquired by structured illumination microscopy (SIM). Both optical sectioning and super-resolution applications are supported. The software is also capable of maximum a posteriori probability image estimation (MAP-SIM), an alternative method for reconstruction of structured illumination images. MAP-SIM can potentially reduce reconstruction artifacts, which commonly occur due to refractive index mismatch within the sample and to imperfections in the illumination.

20 November 2014 in Optics Express
Verified
Journal Article
Open access
PDF file
TLTomáš Lukeš
Tomáš Lukeš
PKPavel Křížek
Pavel Křížek
ZŠZdeněk Švindrych
Zdeněk Švindrych
JBJakub Benda
Jakub Benda
MOMartin Ovesný
Martin Ovesný
GHGuy M. Hagen
Guy M. Hagen
We introduce and demonstrate a new high performance image reconstruction method for super-resolution structured illumination microscopy based on maximum a posteriori probability estimation (MAP-SIM). Imaging performance is demonstrated on a variety of fluorescent samples of different thickness, labeling density and noise levels. The method provides good suppression of out of focus light, improves spatial resolution, and allows reconstruction of both 2D and 3D images of cells even in the case of weak signals. The method can be used to process both optical sectioning and super-resolution structured illumination microscopy data to create high quality super-resolution images.

28 February 2013
Verified
Conference Paper
Open access
PDF file
SLStefan Lederer
Stefan Lederer
CMChristopher Mueller
Christopher Mueller
CTChristian Timmerer
Christian Timmerer
CCCyril Concolato
Cyril Concolato
JFJean Le Feuvre
Jean Le Feuvre
KFKarel Fliegel
Karel Fliegel
The delivery of multimedia content over HTTP and on top of existing Internet infrastructures is becoming the preferred method within heterogeneous environment. The basic design principle is having an intelligent client which selects given and applicable media representations by issuing HTTP requests for individual segments based on the users' context and current conditions. Typically, this client behavior differs between implementations of the same kind and for the objective evaluations thereof appropriate datasets are needed. This paper presents a distributed dataset for the recently published MPEG-DASH standard which is mirrored at different sites across Europe, namely Klagenfurt, Paris, and Prague. A client implementation may choose to request segments from these sites and dynamically switch to a different location, e.g., in case the one currently used causes any issues. Thus, this distributed DASH dataset can be used for real-world evaluations enabling the simulation of switching between different content delivery networks.

7 December 2016 in IEEE Journal of Selected Topics in Signal Processing
Verified
Journal Article
Closed access
LKLukas Krasula
Lukas Krasula
MNManish Narwaria
Manish Narwaria
KFKarel Fliegel
Karel Fliegel
PCPatrick Le Callet
Patrick Le Callet
The popularity of high dynamic range (HDR) imaging has grown in both academic and private research sectors. Since the native visualization of HDR content still has its limitations, the importance of dynamic range compression (i.e., tone-mapping) is very high. This paper evaluates observers' preference of experience in context of image tone-mapping. Given the different nature of natural and computer-generated content, the way observers perceive the quality of tone-mapped images can be fundamentally different. In this paper, we describe a subjective experiment attempting to determine users' preference with respect to these two types of content in two different viewing scenarios-with and without the HDR reference. The results show that the absence of the reference can significantly influence the subjects' preferences for the natural images, while no significant impact has been found in the case of the synthetic images. Moreover, we introduce a benchmarking framework and compare the performance of selected objective metrics. The resulting dataset and framework are made publicly available to provide a common test bed and methodology for evaluating metrics in the considered scenario.

23 August 2018 in GigaScience
Verified
Journal Article
Open access
PDF file
JPJakub Pospíšil
Jakub Pospíšil
TLTomáš Lukeš
Tomáš Lukeš
JBJustin Bendesky
Justin Bendesky
KFKarel Fliegel
Karel Fliegel
KSKathrin Spendier
Kathrin Spendier
GHGuy M. Hagen
Guy M. Hagen
Background: Structured illumination microscopy (SIM) is a family of methods in optical fluorescence microscopy that can achieve both optical sectioning and super-resolution effects. SIM is a valuable method for high-resolution imaging of fixed cells or tissues labeled with conventional fluorophores, as well as for imaging the dynamics of live cells expressing fluorescent protein constructs. In SIM, one acquires a set of images with shifting illumination patterns. This set of images is subsequently treated with image analysis algorithms to produce an image with reduced out-of-focus light (optical sectioning) and/or with improved resolution (super-resolution). Findings: Five complete, freely available SIM datasets are presented including raw and analyzed data. We report methods for image acquisition and analysis using open-source software along with examples of the resulting images when processed with different methods. We processed the data using established optical sectioning SIM and super-resolution SIM methods and with newer Bayesian restoration approaches that we are developing. Conclusions: Various methods for SIM data acquisition and processing are actively being developed, but complete raw data from SIM experiments are not typically published. Publically available, high-quality raw data with examples of processed results will aid researchers when developing new methods in SIM. Biologists will also find interest in the high-resolution images of animal tissues and cells we acquired. All of the data were processed with SIMToolbox, an open-source and freely available software solution for SIM.