Muhammad Faheem

Dr. Muhammad Faheem

Mayo Clinic, Jacksonville, Alabama, USA

Research Focus & Metrics

Academic Career Length

17Years (2010-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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21 July 2010 in The Journal of Infection in Developing Countries
Verified
Journal Article
Open access
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URUmmar Raheel
Ummar Raheel
Muhammad FaheemMuhammad Faheem
Muhammad Faheem
MRMohammad Nasir Riaz
Mohammad Nasir Riaz
NKNaghmana Kanwal
Naghmana Kanwal
FJFarakh Javed
Farakh Javed
IQIshtiaq Qadri
Ishtiaq Qadri
The Indian Subcontinent has emerged as a scene of many mosquito-borne infectious diseases, including malaria and dengue fever. After the 1990s, the rate of malaria declined owing largely to preventive measures, but at the same time dengue fever (DF) and dengue hemorrhagic fever (DHF) were increasing in the region. Outbreaks were recorded in all countries of the Indian Subcontinent with India, Pakistan, Bangladesh and Sri Lanka on the forefront and suffering from the largest number of cases and deaths. We discuss annual cases of DF/DHF in these four countries and possible factors involved in DF outbreaks. We also discuss prevalent serotypes in this region where data suggest the emergence of DEN2 and DEN3 as the most dominant and lethal serotypes. Climate is an important factor influencing DF outbreaks, and rainfall, temperature and humidity play a pivotal role in DF outbreaks. Finally the economic impact of DF/DHF cases is discussed showing that direct and indirect economic loss due to DF/DHF reaches millions of USD each year.

20 December 2017 in PLOS ONE
Verified
Journal Article
Open access
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RGRayssa Almeida Garcia
Rayssa Almeida Garcia
LMLeonardo Lima Pepino Macedo
Leonardo Lima Pepino Macedo
DNDanila Cabral Do Nascimento
Danila Cabral Do Nascimento
FGFrançois-Xavier Gillet
François-Xavier Gillet
CMClidia Eduarda Moreira-Pinto
Clidia Eduarda Moreira-Pinto
Maria Fatima Grossi–de–SaMaria Fatima Grossi–de–Sa
Maria Fatima Grossi–de–Sa
RNA interference (RNAi) approaches have been applied as a biotechnological tool for controlling plant insect pests via selective gene down regulation. However, the inefficiency of RNAi mechanism in insects is associated with several barriers, including dsRNA delivery and uptake by the cell, dsRNA interaction with the cellular membrane receptor and dsRNA exposure to insect gut nucleases during feeding. The cotton boll weevil (Anthonomus grandis) is a coleopteran in which RNAi-mediated gene silencing does not function efficiently through dsRNA feeding, and the factors involved in the mechanism remain unknown. Herein, we identified three nucleases in the cotton boll weevil transcriptome denoted AgraNuc1, AgraNuc2, and AgraNuc3, and the influences of these nucleases on the gene silencing of A. grandis chitin synthase II (AgraChSII) were evaluated through oral dsRNA feeding trials. A phylogenetic analysis showed that all three nucleases share high similarity with the DNA/RNA non-specific endonuclease family of other insects. These nucleases were found to be mainly expressed in the posterior midgut region of the insect. Two days after nuclease RNAi-mediated gene silencing, dsRNA degradation by the gut juice was substantially reduced. Notably, after nucleases gene silencing, the orally delivered dsRNA against the AgraChSII gene resulted in improved gene silencing efficiency when compared to the control (non-silenced nucleases). The data presented here demonstrates that A. grandis midgut nucleases are effectively one of the main barriers to dsRNA delivery and emphasize the need to develop novel RNAi delivery strategies focusing on protecting the dsRNA from gut nucleases and enhancing its oral delivery and uptake to crop insect pests.

25 July 2023 in Proteomes
Verified
Journal Article
Open access
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DJDianny Elizabeth Jimenez
Dianny Elizabeth Jimenez
MTMuhammad Tahir
Muhammad Tahir
Muhammad FaheemMuhammad Faheem
Muhammad Faheem
WAWellington Bruno dos Santos Alves
Wellington Bruno dos Santos Alves
BCBarbara de Lucena Correa
Barbara de Lucena Correa
RPRinaldo Wellerson Pereira
Rinaldo Wellerson Pereira
In recent decades, the role played by extracellular vesicles in physiological and pathological processes has attracted attention. Extracellular vesicles are released by different types of cells and carry molecules that could become biomarkers for the diagnosis of diseases. Extracellular vesicles are also moldable tools for the controlled release of bioactive substances in clinical and therapeutic applications. However, one of the significant challenges when studying these exciting and versatile vesicles is the purification process, which presents significant difficulties in terms of lack of purity, yield, and reproducibility, reflected in unreliable data. Therefore, our objective in the present study was to compare the proteomic profile of serum-derived EVs purified using ExoQuick™ (Systems Biosciences), Total Isolation Kit (Life Technologies), Ultracentrifugation, and Ultrafiltration. Each technique utilized for purification has shown different concentrations and populations of purified particles. The results showed marked differences in distribution, size, and protein content, demonstrating the need to develop reproducible and reliable protocols to isolate extracellular vesicles for their clinical application.

17 October 2022 in Plants
Verified
Journal Article
Open access
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FAFabricio B. M. Arraes
Fabricio B. M. Arraes
DVDaniel DN Vasquez
Daniel DN Vasquez
MTMuhammad Tahir
Muhammad Tahir
DPDaniele Pinheiro
Daniele Pinheiro
Muhammad FaheemMuhammad Faheem
Muhammad Faheem
Maria Fatima Grossi–de–SaMaria Fatima Grossi–de–Sa
Maria Fatima Grossi–de–Sa
The root-knot nematode (RKN), Meloidogyne incognita, is a devastating soybean pathogen worldwide. The use of resistant cultivars is the most effective method to prevent economic losses caused by RKNs. To elucidate the mechanisms involved in resistance to RKN, we determined the proteome and transcriptome profiles from roots of susceptible (BRS133) and highly tolerant (PI 595099) Glycine max genotypes 4, 12, and 30 days after RKN infestation. After in silico analysis, we described major defense molecules and mechanisms considered constitutive responses to nematode infestation, such as mTOR, PI3K-Akt, relaxin, and thermogenesis. The integrated data allowed us to identify protein families and metabolic pathways exclusively regulated in tolerant soybean genotypes. Among them, we highlighted the phenylpropanoid pathway as an early, robust, and systemic defense process capable of controlling M. incognita reproduction. Associated with this metabolic pathway, 29 differentially expressed genes encoding 11 different enzymes were identified, mainly from the flavonoid and derivative pathways. Based on differential expression in transcriptomic and proteomic data, as well as in the expression profile by RT–qPCR, and previous studies, we selected and overexpressed the GmPR10 gene in transgenic tobacco to assess its protective effect against M. incognita. Transgenic plants of the T2 generation showed up to 58% reduction in the M. incognita reproduction factor. Finally, data suggest that GmPR10 overexpression can be effective against the plant parasitic nematode M. incognita, but its mechanism of action remains unclear. These findings will help develop new engineered soybean genotypes with higher performance in response to RKN infections.

7 February 2022 in Applied Nanoscience
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Journal Article
Closed access
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NBNajma Bibi
Najma Bibi
ARAsim Ur Rehman
Asim Ur Rehman
NRNosheen Fatima Rana
Nosheen Fatima Rana
HAHashaam Akhtar
Hashaam Akhtar
MKMuhammad Ijaz Khan
Muhammad Ijaz Khan
NANaveed Ahmed
Naveed Ahmed

10 December 2021 in Saudi Journal of Biological Sciences
Verified
Journal Article
Open access
MSMaaza Sana
Maaza Sana
AJAneela Javed
Aneela Javed
SJSyed Babar Jamal
Syed Babar Jamal
MJMuhammad Junaid
Muhammad Junaid
Muhammad FaheemMuhammad Faheem
Muhammad Faheem
Crimean-Congo Hemorrhagic Fever (CCHF) is a tick-borne viral infection with no licensed vaccine or therapeutics available for its treatment. In the present study we have developed the first multi-epitope subunit vaccine effective against all the seven genotypes of CCHF virus (CCHFV). The vaccine contains five B-cell, two MHC-II (HTL), and three MHC-I (CTL) epitopes screened from two structural glycoproteins (Gc and Gn in M segment) of CCHFV with an N-terminus human β-defensin as an adjuvant, as well as an N-terminus EAAAK sequence. The epitopes were rigorously investigated for their antigenicity, allergenicity, IFN gamma induction, anti-inflammatory responses, stability, and toxicity. The three-dimensional structure of the vaccine was predicted and docked with TLR-3, TLR-8, and TLR-9 receptors to find the strength of the binding complexes via molecular dynamics simulation. After codon adaptation, the subunit vaccine construct was developed in a pDual-GC plasmid and has population coverage of 98.47% of the world's population (HLA-I & II combined). The immune simulation studies were carried out on the C-ImmSim in-silico interface showing a marked increase in the production of cellular and humoral response (B-cell and T-cell) as well as TGFβ, IL-2, IL-10, and IL-12 indicating that the proposed vaccine would be able to sufficiently provoke both humoral and cell-mediated immune responses. Thus, making it a new and promising vaccine candidate against CCHFV.