The leaf area index (LAI) is a biophysical crop parameter of great interest for agronomists and plant breeders. Direct methods for measuring LAI are normally destructive, while indirect methods are either costly or require long pre- and post-processing times. In this study, a novel deep learning-based (DL) model was developed using RGB nadir-view images taken from a high-throughput plant phenotyping platform for LAI estimation of maize. The study took place in a commercial maize breeding trial during two consecutive growing seasons. Ground-truth LAI values were obtained non-destructively using an allometric relationship that was derived to calculate the leaf area of individual leaves from their main leaf dimensions (length and maximum width). Three convolutional neural network (CNN)-based DL model approaches were proposed using RGB images as input. One of the models tested is a classification model trained with a set of RGB images tagged with previously measured LAI values (classes). The second model provides LAI estimates from CNN-based linear regression and the third one uses a combination of RGB images and numerical data as input of the CNN-based model (multi-input model). The results obtained from the three approaches were compared against ground-truth data and LAI estimations from a classic indirect method based on nadir-view image analysis and gap fraction theory. All DL approaches outperformed the classic indirect method. The multi-input_model showed the least error and explained the highest proportion of the observed LAI variance. This work represents a major advance for LAI estimation in maize breeding plots as compared to previous methods, in terms of processing time and equipment costs.
1 March 2019 in Environmental and Experimental Botany
Strawberry (Fragraria x ananassa) is a crop affected by various soil-borne fungal pathogens with mostly non-specific foliar symptoms and often requiring laboratory isolation for correct diagnosis. Moreover, these nonspecific foliar symptoms, appreciated by the human eye, appear after some time following infection by the pathogen. Early detection of plant diseases is one of the primary objectives in agriculture because it may contribute to identifying more tolerant cultivars in breeding programs and optimise pesticide use in agricultural production with earlier applications in emerging disease foci. New technologies, such as remote sensing and machine learning (ML) algorithms, have arisen as potential tools to improve the ability to detect and classify different crop diseases. The combined use of hyperspectral imagery and ML algorithms were investigated to detect and classify the physiological stress caused by early infections of Fusarium wilt in strawberry plants. Six ML models, namely artificial neural network, decision tree, K-nearest neighbour, support vector machine, multinomial logistic regression and Naïve Bayes were developed to estimate physiological stress associated with Fusarium wilt disease. The results showed that stomatal conductance (gs) and photosynthesis (A) declined even without visual symptoms of the disease. Among the six ML models evaluated, the artificial neural network model showed the highest classification performance with an overall accuracy of 81%, regardless of the physiological parameter utilized for model training. Moreover, the artificial neural network accurately predicted the absolute values of both physiological parameters (gs and A) based on the complete spectral signature from visually healthy foliar tissue, achieving coefficients of determination of 84% and 81%, respectively. Consequently, ML models utilizing physiological response data and hyperspectral imaging exhibited remarkable robustness, facilitating the estimation of Fusarium wilt severity in strawberry plants even without visual symptoms.
The scarcity of water resources affects tomato production. Deficit irrigation may optimize water management with only a low reduction in yield. Deficit irrigation scheduling based on applied water presented no clear conclusions. Water stress management based on plant water status, such as water potential, could improve the scheduling. The aim of this work was to evaluate the physiological and yield responses of different tomato cultivars to deficit irrigation. Three experiments were carried out in 2020 and 2022 at the University of Seville (Spain). “Cherry” and “chocolate Marmande” cultivars with an indeterminate growth pattern were grown in a greenhouse. Treatments were: Control (full irrigated) and Deficit. Deficit plants were irrigated based on water potential measurements. Moderate water stress did not significantly reduce the yield, although it affected other processes. Fruit size and total soluble solids were the most sensitive parameters to water stress. The latter increased only when persistent water stress was applied. However, truss development and fruit number were not affected by the level of water stress imposed. Such results suggest that moderate water stress, even in sensitive phenological stages such as flowering, would not reduce yield. Deficit irrigation scheduling based on plant water status will allow accurate management of water stress.