Yue Song

Dr. Yue Song

orcid

Research Focus & Metrics

Academic Career Length

7Years (2020-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
1 September 2020 in Microbial Genomics
Verified
Journal Article
Open access
LCLongxin Chen
Longxin Chen
XGXingke Gao
Xingke Gao
RLRunting Li
Runting Li
LZLimeng Zhang
Limeng Zhang
RHRui Huang
Rui Huang
Long ZhangLong Zhang
Long Zhang
Microsporidia are a large group of unicellular parasites that infect insects and mammals. The simpler life cycle of microsporidia in insects provides a model system for understanding their evolution and molecular interactions with their hosts. However, no complete genome is available for insect-parasitic microsporidian species. The complete genome of Antonospora locustae, a microsporidian parasite that obligately infects insects, is reported here. The genome size of A. locustae is 3 170 203 nucleotides, composed of 17 chromosomes onto which a total of 1857 annotated genes have been mapped and detailed. A unique feature of the A. locustae genome is the presence of an ultra-low GC region of approximately 25 kb on 16 of the 17 chromosomes, in which the average GC content is only 20 %. Transcription profiling indicated that the ultra-low GC region of the parasite could be associated with differential regulation of host defences in the fat body to promote the parasite’s survival and propagation. Phylogenetic gene analysis showed that A. locustae, and the microsporidian family in general, is likely at an evolutionarily transitional position between prokaryotes and eukaryotes, and that it evolved independently. Transcriptomic analysis showed that A. locustae can systematically inhibit the locust phenoloxidase PPO, TCA and glyoxylate cycles, and PPAR pathways to escape melanization, and can activate host energy transfer pathways to support its reproduction in the fat body, which is an insect energy-producing organ. Our study provides a platform and model for studies of the molecular mechanisms of microsporidium–host interactions in an energy-producing organ and for understanding the evolution of microsporidia.

19 September 2025 in Microorganisms
Verified
Journal Article
Open access
PDF file
HLHao Lu
Hao Lu
LYLIU YICHEN
LIU YICHEN
YSYue Song
Yue Song
LCLongxin Chen
Longxin Chen
LZLimeng Zhang
Limeng Zhang
LWLinqing Wang
Linqing Wang
Virus-neutralizing antibodies (VNAs) serve as critical components of host immune defense, countering viral infections by specifically recognizing epitopes on viral surface antigens to block viral entry and replication. This review elucidates the functional mechanisms of VNAs, with a focus on the dynamic interactions between the Fab region and viral epitopes, including steric hindrance and conformational locking, as well as the effector functions mediated by the Fc segment. Furthermore, we dissect diverse viral evasion strategies against neutralization that have emerged in recent studies, encompassing antigenic drift/shift, glycan shielding, epitope occlusion, antibody-dependent enhancement, and mutation accumulation under population immune pressure. Integrating structural biology insights with clinical evidence, we analyze challenges in developing broadly neutralizing antibodies and highlight innovative technological approaches. Our synthesis aims to establish a theoretical framework for the rational design and clinical translation of next-generation VNAs, thereby advancing novel strategies for antiviral therapeutics development.

1 December 2025 in Veterinary Sciences
Verified
Journal Article
Open access
PDF file
HLHao Lu
Hao Lu
YXYuqing Xie
Yuqing Xie
LCLongxin Chen
Longxin Chen
YSYue Song
Yue Song
LZLimeng Zhang
Limeng Zhang
LWLinqing Wang
Linqing Wang
Under modern intensive and large-scale animal farming practices, the high animal density and confined spaces have progressively elevated the risk of disease transmission while complicating epidemic prevention and control. Current estimates indicate that over 70% of animal disease risks stem from viral infections, primarily transmitted via aerosol pathways. Such aerosol-mediated transmission not only triggers concentrated disease outbreaks within farms but also endangers farm workers and adjacent environments, thereby amplifying prevention challenges and substantially impeding the sustainable development of livestock industries. Therefore, this review systematically expounds the sources, hazards, and influencing factors of microbial aerosols in livestock farming environments. Furthermore, it proposes targeted prevention and control measures to address these challenges, aiming to provide theoretical and practical insights for enhancing disease prevention and promoting the healthy development of the livestock industry.

8 April 2022 in Viruses
Verified
Journal Article
Open access
PDF file
YZYixuan Zhang
Yixuan Zhang
YSYue Song
Yue Song
HRHaojie Ren
Haojie Ren
QZQuan Zeng
Quan Zeng
YYYixin Yuan
Yixin Yuan
ZWZhanyong Wei
Zhanyong Wei
Porcine deltacoronavirus (PDCoV) mainly causes severe diarrhea and intestinal pathological damage in piglets and poses a serious threat to pig farms. Currently, no effective reagents or vaccines are available to control PDCoV infection. Single-chain fragment variable (scFv) antibodies can effectively inhibit virus infection and may be a potential therapeutic reagent for PDCoV treatment. In this study, a porcine phage display antibody library from the peripheral blood lymphocytes of piglets infected with PDCoV was constructed and used to select PDCoV-specific scFv. The library was screened with four rounds of biopanning using the PDCoV N protein, and the colony with the highest affinity to the PDCoV N protein was obtained (namely, N53). Then, the N53-scFv gene fragment was cloned into plasmid pFUSE-hIgG-Fc2 and expressed in HEK-293T cells. The scFv-Fc antibody N53 (namely, scFv N53) was purified using Protein A-sepharose. The reactive activity of the purified antibody with the PDCoV N protein was confirmed by indirect enzyme-linked immunosorbent assay (ELISA), western blot and indirect immunofluorescence assay (IFA). Finally, the antigenic epitopes that the scFv N53 recognized were identified by a series of truncated PDCoV N proteins. The amino acid residues 82GELPPNDTPATTRVT96 of the PDCoV N protein were verified as the minimal epitope that can be recognized by the scFv-Fc antibody N53. In addition, the interaction between the scFv-Fc antibody N53 and the PDCoV N protein was further analyzed by molecule docking. In conclusion, our research provides some references for the treatment and prevention of PDCoV.

7 March 2024 in Organic & Biomolecular Chemistry
Verified
Journal Article
Closed access
PDF file
YSYue Song
Yue Song
WFWenjie Fan
Wenjie Fan
CYChen Yao
Chen Yao
HWHeng Wang
Heng Wang
XLXiuxiang Lu
Xiuxiang Lu
MWMengdi Wang
Mengdi Wang
3 kinds of quinazoline derivatives and 5 kinds pyrrolo[3,2- d ]pyrimidine derivatives targeting TLR7 were synthesized. The antiviral efficacy of these compounds was evaluated  in vitro and in vivo .

4 June 2024 in Microbiology Spectrum
Verified
Journal Article
Open access
LWLinqing Wang
Linqing Wang
YSYue Song
Yue Song
MXMenglong Xu
Menglong Xu
CZChi Zhang
Chi Zhang
LZLimeng Zhang
Limeng Zhang
ZWZhanyong Wei
Zhanyong Wei
Porcine parvovirus (PPV) is one of the most important pathogens that cause reproductive failure in pigs. However, the pathogenesis of PPV infection remains unclear. Proteomics is a powerful tool to understand the interaction between virus and host cells. In the present study, we analyzed the proteomics of PPV-infected PK-15 cells. A total of 32 and 345 proteins were differentially expressed at the early and replication stages, respectively. Subsequent gene ontology annotation and Kyoto Encyclopedia of Genes and Genomes enrichment analysis showed these differentially expressed proteins were significantly enriched in pathways including toll-like receptor signaling pathway, tumor necrosis factor signaling pathway, and viral carcinogenesis. The expression of poly (rC) binding protein 1 (PCBP1) was observed to decrease after PPV infection. Overexpressed or silenced PCBP1 expression inhibited or promoted PPV infection. Our studies established a foundation for further exploration of the multiplication mechanism of PPV. IMPORTANCE: Porcine parvovirus (PPV) is a cause of reproductive failure in the swine industry. Our knowledge of PPV remains limited, and there is no effective treatment for PPV infection. Proteomics of PPV-infected PK-15 cells was conducted to identify differentially expressed proteins at 6 hours post-infection (hpi) and 36 hpi. Gene ontology and Kyoto Encyclopedia of Genes and Genomes enrichment analysis showed that various pathways participate in PPV infection. Poly (rC) binding protein 1 was confirmed to inhibit PPV replication, which provided potential targets for anti-PPV infection. Our findings improve the understanding of PPV infection and pave the way for future research in this area.