The authors synthesized a series of functionalized diatomite-based materials and assessed their U(VI) removal performance. Phosphor-derivative-modified diatomite adsorbents were synthesized by the three-route procedures: polymerisation (DIT-Vin-PA_in), covalent (DIT-Vin-PA_cov), and non-covalent (DIT-PA) immobilization of the functional groups. The effects of the diatomite modification have been studied using powder XRD, solid state NMR, FTIR spectroscopy, electronic microscopy, EDX, acid–base titrations, etc. The maximum adsorption capacities of DIT-Vin-PA_cov, DIT-PA, and DIT-Vin-PA_in samples were 294.3 mg/g, 253.8 mg/g, and 315.9 mg/g, respectively, at pH₀ = 9.0. The adsorption amount of U(VI) ions using the prepared DIT-Vin-PA_in was 95.63%, which is higher compared with that of the natural diatomite at the same concentration. The adsorption studies demonstrated that the phosphonic and hydroxyl groups on the surface of the diatomite played pivotal roles in the U(VI) adsorption. The U(VI) ions as a “hard” Lewis acid could easily form bonds with the “hard” donor P-containing ligands, so that the as-prepared DIT-Vin-PA_in sample had excellent adsorption properties. The monolayer adsorption of the analyte on the surface of the raw diatomite and DIT-PA was observed. It was found from the thermodynamic parameters that the uptake of the U(VI) ions by the obtained adsorbents was a spontaneous process with an endothermic effect. Findings of the present work highlight the potential for using modified diatomite as effective and reusable adsorbents for the extraction of U(VI) in the waste, river, and tap waters with satisfactory results.