Resistance to Septoria tritici blotch (STB) is an economically important trait in many wheat-breeding programs across the world. Several quantitative trait loci (QTL) for STB resistance were identified in wheat but due to the dynamic pathogen population it is necessary to continuously identify new resistance genes/QTL and determine the underlying resistance mechanism. In this work, we integrated QTL mapping and transcriptome profiling to identify candidate genes underlying QTL associated with STB resistance in bread wheat at the seedling stage. The results revealed four QTL on chromosomes 1BS, 1BL, 3AS and 3DL for STB resistance. Among these, two QTL on 2BL and 3DL were mapped for chlorosis, necrosis and pycnidia while the other two on 1BS and 3AS were associated with necrosis and pycnidia. Among the four identified QTL, genes were identified in three QTL (1BS, 2BL and 3DL). In total, 238 differentially expressed genes (DEGs) were localized in 1BS, 16 DEGs in 2BL and 80 DEGs in 3DL QTL region respectively. F-box protein, NBS-LRR disease resistance genes and receptor-like protein kinase were the most over-represented. The results emphasize the importance of integrating QTL and transcriptome analysis to accelerate the identification of key genes underlying the traits of interest.

Plant phenotyping by imaging allows automated analysis of plants for various morphological and physiological traits. In this work, we developed a low-cost RGB imaging phenotyping lab (LCP lab) for low-throughput imaging and analysis using affordable imaging equipment and freely available software. LCP lab comprising RGB imaging and analysis pipeline is set up and demonstrated with early vigour analysis in wheat. Using this lab, a few hundred pots can be photographed in a day and the pots are tracked with QR codes. The software pipeline for both imaging and analysis is built from freely available software. The LCP lab was evaluated for early vigour analysis of five wheat cultivars. A high coefficient of determination (R2 0.94) was obtained between the dry weight and the projected leaf area of 20-day-old wheat plants and R2 of 0.9 for the relative growth rate between 10 and 20 days of plant growth. Detailed description for setting up such a lab is provided together with custom scripts built for imaging and analysis. The LCP lab is an affordable alternative for analysis of cereal crops when access to a high-throughput phenotyping facility is unavailable or when the experiments require growing plants in highly controlled climate chambers. The protocols described in this work are useful for building affordable imaging system for small-scale research projects and for education.

Winter hardiness is influenced by many environmental factors, and freezing tolerance is among the main ones, rendering the phenotypic selection of winter wheat (Triticum aestivum L.) under field conditions a difficult task due to the irregular occurrence or absence of winter damage in field trials. Plant growth in response to low temperatures during the acclimation period might be used as an indirect approach to assess freezing tolerance. Thirteen winter wheat cultivars were investigated for autumn and spring growth and winter hardiness under field conditions for two growing seasons. Additionally, a precise and non-destructive technique was applied to study leaf growth at a high temporal resolution accompanied by a freezing tolerance test under laboratory and semi-field conditions. The results of the study revealed variations in thermal growth patterns among the 13 winter wheat cultivars. The cultivars with the lower base temperature (T_b) values, in particular ‘Lakaja DS’ and ‘Sedula DS’, grew slower and, thus, had a lower response to temperature increases (Slp_LER-T) than the fast-growing cultivars, such as ‘Simano” and ‘KWS Ferrum’, whose Slp_LER-T values were stronger and whose T_b values were higher. A correlation analysis of the investigated traits showed a clear association between leaf growth parameters and freezing tolerance, indicating a certain level of genetic adaptation to growth cessation under low temperatures, and which confirmed that these are important factors for explaining the freezing tolerance of different cultivars. The evaluated freezing tolerance (LT₃₀) showed a strong negative correlation (r = −0.82 ÷ −0.89, p = 0.01) to winter hardiness scores from the field experiment, supporting the essential contribution of growth rate patterns to winter hardiness. The findings provide novel information for the development of winter-hardy wheat cultivars that are adapted to the future environments.

Waxy starch with a modified amylose-to-amylopectin ratio is desired for a range of applications in food and non-food industries; however, yield performance and grain quality characteristics of waxy wheat cultivars are usually inferior in comparison to advanced non-waxy cultivars. In this study, we compared waxy (‘Eldija’, ‘Sarta’) and non-waxy (‘Skagen’, ‘Suleva DS’) winter wheat cultivars grown under high and low-input farming systems over two cropping seasons by evaluating their yield and grain quality, including flour, dough, and starch physicochemical properties. The yield of waxy cv. ‘Sarta’ was significantly lower compared to the non-waxy cultivars across all trials; however, waxy cv. ‘Eldija’ had a similar yield as non-waxy cultivars (except under high-input conditions cv. ‘Skagen’). Moreover, no significant differences were observed between protein and gluten content of waxy and non-waxy cultivars. Low amylose content typical for waxy wheat cultivars highly correlated (r ≥ 0.8) with lower falling number, flour yield and sedimentation values, lower nitrogen % used for grain, higher flour water absorption and flour particle size index. In general, properties dependent on starch structure demonstrated consistent and significant differences between both starch types. The prevailing heat waves during the grain filling period decreased grain test weight but increased protein and gluten content and caused gluten to be weaker. Dough development time at these conditions became longer, dough softening lowered and starch content decreased, but A-starch, starch peak and final viscosity values increased. Low-input farming had a negative effect on grain yield, grain nitrogen uptake and grain test weight but increased phosphorus content in grain. The unique dough mixing properties of waxy cultivar ‘Eldija’ suggest that it could be used in mixtures along with non-waxy wheat for dough quality improvement.

Climate change and global food security efforts are driving the need for adaptable crops in higher latitude temperate regions. To achieve this, traits linked with winter hardiness must be introduced in winter-type crops. Here, we evaluated the freezing tolerance (FT) of a panel of 160 winter wheat genotypes of Nordic origin under controlled conditions and compared the data with the winter hardiness of 74 of these genotypes from a total of five field trials at two locations in Norway. Germplasm with high FT was identified, and significant differences in FT were detected based on country of origin, release years, and culton type. FT measurements under controlled conditions significantly correlated with overwintering survival scores in the field (r ≤ 0.61) and were shown to be a reliable complementary high-throughput method for FT evaluation. Genome-wide association studies (GWAS) revealed five single nucleotide polymorphism (SNP) markers associated with FT under controlled conditions mapped to chromosomes 2A, 2B, 5A, 5B, and 7A. Field trials yielded 11 significant SNP markers located within or near genes, mapped to chromosomes 2B, 3B, 4A, 5B, 6B, and 7D. Candidate genes identified in this study can be introduced into the breeding programs of winter wheat in the Nordic region.

Water deficit and heat stress are the main abiotic stresses affecting the yield and quality of winter wheat. The increasing frequency of the simultaneous occurrence of these two stresses might threaten global food security and drives the need to breed resilient high-quality cultivars. The aim of this study was to evaluate the grain yield, quality and gluten protein characteristics in 50 winter wheat cultivars and breeding lines during the harvest years of 2018 and 2019. The yield and grain quality components were affected more severely by the combined heat and drought in 2019 than the drought in 2018. Two nitrogen (N) fertilization regimes were studied, sustainable (S, 15/100/30 kg N ha⁻¹) and high-input (HI, 15/100/100 kg N ha⁻¹). The yield was higher in HI trials compared to S trials by 2.2 t ha⁻¹ in 2018 and by 2.4 t ha⁻¹ in 2019. Higher protein content and sedimentation volume and lower yield, test weight and starch content were observed under combined heat and drought stress in 2019 compared to 2018. Genotypes containing the Glu-D1 x5-y10 allele exhibited the higher amounts of unextractable polymeric proteins (%UPP = 58.5%) in gluten studied by size exclusion liquid chromatography (SE-HPLC) as compared to Glu-D1 x2-y12 allele (%UPP = 54.3%). Genotype was the main determinant of gluten protein characteristics regardless of the nitrogen application and the abiotic stress conditions. The results suggest that the relatively mild drought and heat events in Lithuania might not threaten gluten quality in the future; however, breeding efforts should be directed towards improved drought and heat stress resistance to ensure stable wheat productivity in the region.